Lab Publications

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Found 73 results
Author Title [ Type(Asc)] Year
Filters: Author is Neymotin, SA  [Clear All Filters]
Journal Article
Lytton, WW., Neymotin S., & Hines ML. (2008).  The virtual slice setup. J Neurosci Methods. 171, 309-315.
Fenton, AA., Kao HY., Neymotin S., Olypher A., Vayntrub Y., Lytton WW., et al. (2008).  Unmasking the CA1 ensemble place code by exposures to small and large environments: more place cells and multiple, irregularly arranged, and expanded place fields in the larger space. jnsci. 28, 11250-11262.
Neymotin, S., Talbot ZN., Jung JQ., Fenton AA., & Lytton WW. (2017).  Tracking recurrence of correlation structure in neuronal recordings. J Neurosci Methods. 275, 1-9.
Dura-Bernal, S., Chadderdon GL., Neymotin S., Francis JT., & Lytton WW. (2014).  Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm. Pattern Recognit Lett. 36, 204–212.
Lakatos, P., Barczak A., Neymotin S., Lytton WW., McGinnis T., Javitt D., et al. (2014).  Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system. Society for Neuroscience Abstracts. 44,
Rowan, M., & Neymotin S. (2013).  Synaptic scaling balances learning in a spiking model of neocortex. Springer LNCS. 7824, 20–29.
Neymotin, S., Jacobs KM., Fenton AA., & Lytton WW. (2011).  Synaptic information transfer in computer models of neocortical columns. J Comput Neurosci. 30, 69-84.
Neymotin, S., Olypher AV., Kao HY., Kelemen E., Jozwicka AE., Lytton WW., et al. (2008).  Standardized assessment of extracellular single unit isolation quality. socns. 690, 12.
Dura-Bernal, S., Li K., Neymotin S., Francis JT., Principe JC., & Lytton WW. (2016).  Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm. Front Neurosci. 10, 28.
Chadderdon, GL., Neymotin S., Kerr CC., & Lytton WW. (2012).  Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex. PLoS One. 7, e47251.
Neymotin, S., Chadderdon GL., Kerr CC., Francis JT., & Lytton WW. (2013).  Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex. Neural Comput. 25, 3263–3293.
Neymotin, S., Suter BA., Dura-Bernal S., Shepherd GM., Migliore M., & Lytton WW. (2017).  Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol. 117, 148-162.
Neymotin, S., McDougal R. A., Sherif MA., Fall CP., Hines ML., & Lytton WW. (2015).  Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. Neural Comput. 27, 898–924.
Neymotin, S., Dura-Bernal S., Lakatos P., Sanger TD., & Lytton WW. (2016).  Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex. Front Pharmacol. 7, 157.
Lytton, WW., Neymotin S., & Kerr CC. (2014).  Multiscale modeling for clinical translation in neuropsychiatric disease. J Comput Surgery. 1, 7.
Chadderdon, GL., Mohan A., Suter BA., Neymotin S., Kerr CC., Francis JT., et al. (2014).  Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput. 26, 1239–1262.
Dura-Bernal, S., Li K., Brockmeier A., Kerr C., Neymotin S., Principe J., et al. (2014).  Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex. BMC Neuroscience. 15, P106.
Taxin, ZH., Neymotin S., Mohan A., Lipton P., & Lytton WW. (2014).  Modeling molecular pathways of neuronal ischemia. Prog Mol Biol Transl Sci. 123, 249–275.
Neymotin, S., Lytton WW., Olypher AO., & AA F. (2011).  Measuring the quality of neuronal identification in ensemble recordings. jnsci. 31, 16398–16409.
Dura-Bernal, S., Neymotin S., Suter BA., Shepherd GMG., & Lytton WW. (2018).  Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits. bioRxiv.
Neymotin, S., Lazarewicz MT., Sherif M., Contreras D., Finkel LH., & Lytton WW. (2011).  Ketamine disrupts theta modulation of gamma in a computer model of hippocampus. J Neurosci. 31, 11733-11743.
Lytton, WW., Omurtag A., Neymotin S., & Hines ML. (2008).  Just-in-time connectivity for large spiking networks. ncomp. 20, 2745-2756.
Neymotin, S., Lee HY., Fenton AA., & Lytton WW. (2010).  Interictal EEG Discoordination in a Rat Seizure Model. J Clin Neurophysiol. 27, 438–444.
Sanjay, M., Neymotin S., & Babu KS. (2015).  Impaired dendritic inhibition leads to epileptic activity in a computer model of CA3. Hippocampus. in press.
Neymotin, S., Hilscher MM., Moulin TC., Skolnick Y., Lazarewicz MT., & Lytton WW. (2013).  Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model. PLoS One. 8, e76285.
Lakatos, P., Barczak A., Neymotin S., McGinnis T., Ross D., Javitt DC., et al. (2016).  Global dynamics of selective attention and its lapses in primary auditory cortex. Nat Neurosci. In press.
Dura-Bernal, S., Neymotin S., Kerr CC., Sivagnanam S., Majumdar A., Francis JT., et al. (2017).  Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development. 61, 6–1.
Neymotin, S., Lee HY., Park EH., Fenton AA., & Lytton WW. (2011).  Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci. 5, 19.
Rowan, MS., Neymotin S., & Lytton WW. (2014).  Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Front Comput Neurosci. 8, 39.
Kerr, CC., Neymotin S., Chadderdon GL., Fietkiewicz CT., Francis JT., & Lytton WW. (2012).  Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE Trans Neural Syst Rehab Eng. 20, 153–60.
Neymotin, S., Lytton WW., O'Connell MN., & Lakatos P. (2013).  Dynamical microstates in primary auditory cortex. Society for Neuroscience Abstracts. 43,
Neymotin, S., Uhlrich DJ., Manning KA., & Lytton WW. (2008).  Data mining of time-domain features from neural extracellular field data. Studies in Computational Intelligence. 151, 119-140.
Dura-Bernal, S., Zhou X., Neymotin S., Przekwas A., Francis J. T., & Lytton WW. (2015).  Cortical spiking network interfaced with virtual musculoskeletal arm and robotic arm. Frontiers in Neurorobotics. 9,
Kerr, CC., van Albada SJ., Neymotin S., Chadderdon GL., Robinson PA., & Lytton WW. (2013).  Cortical information flow in Parkinson's disease: a composite network/field model. Front Comput Neurosci. 7, 39.
Neymotin, S., Dura-Bernal S., Moreno H., & Lytton WW. (2017).  Computer modeling for pharmacological treatments for dystonia. Drug Discov Today: Dis Model. In Press.
Eguchi, A., Neymotin S., & Stringer SM. (2014).  Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity. Front Neural Circuits. 8, 16.
Lytton, WW., Neymotin S., Lee HY., Uhlrich DJ., & Fenton AA. (2008).  Circuit changes augment disinhibited shock responses in computer models of neocortex. American Epilepsy Society Annual Meeting. 3, 284.
Neymotin, S., McDougal R. A., Hines ML., & Lytton WW. (2014).  Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex. BMC Neuroscience. 15, P108.
Neymotin, S., McDougal R. A., Bulanova AS., Zeki M., Lakatos P., Terman D., et al. (2016).  Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neurosci. 316, 344-366.
Conference Paper
Neymotin, SA., Uhlrich DJ., & Lytton WW. (2008).  Virtual slice simulation of resonance in a layered cortical model. Society for Neuroscience.
Dura-Bernal, S., Chadderdon G.L.., Neymotin S., Zhou X., Przekwas A.., Francis J.T.., et al. (2013).  Virtual musculoskeletal arm and robotic arm driven by a biomimetic model of sensorimotor cortex with reinforcement learning. Signal Processing in Medicine and Biology Symposium (SPMB), 2013 IEEE. 1-5.
Neymotin, S., Kerr CC., Francis JT., & Lytton WW. (2011).  Training oscillatory dynamics with spike-timing-dependent plasticity in a computer model of neocortex. 2011 IEEE Signal Processing in Medicine and Biology Symposium (SPMB). 1–6.
Neymotin, SA., Olypher AV., Kao HY., Kelemen E., Jozwicka AE., Lytton WW., et al. (2008).  Standardized assessment of extracellular single unit isolation quality. Society for Neuroscience.
Neymotin, SA., Kerr CC., Fietkiewicz CT., Chadderdon GL., & Lytton WW. (2011).  Spike-timing-dependent plasticity and subcortical waves enhance alpha oscillations in a computer model of neocortex. Neuroinformatics.
Neymotin, SA., Wester JC., Contreras D., & Lytton WW. (2011).  Simulating the spread of activation in neocortical circuits. Computational Neuroscience. Computational Neuroscience.
Neymotin, SA., Kerr CC., Chadderdon GL., Francis JT., & Lytton WW. (2011).  Restoring physiological oscillations using neuroprosthetic spike-timing-dependent plasticity in computer model of neocortex. Society for Neuroscience.
Dura-Bernal, S., Li K., Brockmeier A., Kerr CC., Neymotin S., Principe J., et al. (2014).  Repairing lesions via microstimulation in a spiking network model driving a virtual arm.. Society for Neuroscience.
Lytton, WW., Kerr CC., Chadderdon GL., Neymotin SA., & Francis JT. (2012).  Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation. Neural Control of Movement.
Neymotin, SA., Suter BA., Migliore M., Salvador D-B., Shepherd GMG., & Lytton WW. (2015).  Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings. Society for Neuroscience.
Dura-Bernal, S., Gleeson P., Neymotin S., Suter B. A., Quintana A., Cantarelli M., et al. (2018).  NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models. Computational Neuroscience Meeting (CNS 18').
Neymotin, SA., BA S., Migliore M., Salvador D-B., Shepherd GMG., & Lytton WW. (2015).  Motor cortex neurons: from experiment to model via evolutionary algorithms. Computational Neuroscience.
Kerr, CC., Neymotin SA., Song W., Francis JT., & Lytton WW. (2011).  Modulation of stimulus fields in a computer model of the thalamocortical system. Society for Neuroscience.
Neymotin, SA., Salvador D-B., Suter BA., Migliore M., Shepherd GMG., & Lytton WW. (2015).  Microconnectomics of primary motor cortex: a multiscale computer model. Multiscale Modeling. National Institutes of Health.
Dura-Bernal, S., Kerr C., Neymotin S., Suter B., Shepherd G., Francis J., et al. (2015).  Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control. 24th Annual Computational Neuroscience Meeting (CNS15).
Kerr, CC., Mo J., Neymotin SA., M D., & Lytton WW. (2011).  Interlaminar Granger causality and alpha oscillations in a model of macaque cortex. Computational Neuroscience.
Kerr, CC., Neymotin SA., Mo J., Schroeder CE., M D., & Lytton WW. (2011).  Interlaminar feedback connections dominate in macaque inferotemporal cortex: in vivo and in silico studies. Society for Neuroscience.
Neymotin, SA., H L., AA F., & Lytton WW. (2010).  Interictal EEG discoordination in a rat seizure model. Statistical Analysis of Neuronal Data.
Bulanova, AS., McDougal RA., Neymotin SA., Mutai V., Lytton WW., & Hines M. (2014).  Integrating Systems Biology Markup Language (SBML) with NEURON. Computational Neuroscience.
Dura-Bernal, S., Prins N., Neymotin S., Prasad A., Sanchez J., Francis JT., et al. (2014).  Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm.. Neural Control of Movement.
Neymotin, SA., H L., Park EH., AA F., & Lytton WW. (2010).  Emergent oscillations in neocortex: a simulation study. Dynamical Neuroscience XVIII: The Resting Brain: Not at Rest! Satellite meeting for Society for Neuroscience Meeting.
Kerr, CC., van Albada SJ., Chadderdon GL., Neymotin SA., Robinson PA., & Lytton WW. (2012).  Effects of basal ganglia on cortical computation: a hybrid network/neural field model. Society for Neuroscience.
Dura-Bernal, S., Menzies R. J., McLauchlan C., van Albada S. J., Kedziora D. J., Neymotin S., et al. (2016).  Effect of network size on computational capacity. Computational Neuroscience Meeting (CNS 16').
Dura-Bernal, S., Majumdar A., Neymotin S., Sivagnanam S., Francis J. T., & Lytton WW. (2015).  A dynamic data-driven approach to closed-loop neuroprosthetics based on multiscale biomimetic brain models. IEEE Interanationl Conference on High Performance Computing 2015 Workshop: InfoSymbiotics/Dynamic Data Driven Applications Systems (DDDAS) for Smarter Systems, Bangalore, India.
Chadderdon, GL., Neymotin SA., Kerr CC., Francis JT., & Lytton WW. (2012).  Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex. International Conference on Cognititve and Neural Systems 16.
Chadderdon, GL., Neymotin SA., Kerr CC., Francis JT., & Lytton WW. (2012).  Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex. Society for Neuroscience.
Kerr, CC., Fietkiewicz CT., Chadderdon GL., Neymotin SA., & Lytton WW. (2010).  Development of In Silico Brain for DARPA REPAIR project. DARPA Neural Engineering, Science, and Technology Meeting.
Sherif, MA., Barry JM., Neymotin SA., & Lytton WW. (2012).  CPP alters hippocampal CA1 oscillations in rat: simulation and experiment. Computational Neuroscience.
Lytton, WW., Neymotin SA., Lee HK., Uhlrich DJ., & AA F. (2008).  Circuit changes augment disinhibited shock responses in computer models of neocortex. American Epilepsy Society Annual Meeting.