Lab Publications | Neurosim lab

Found 62 results

Filters: Keyword is Society for Neuroscience [Clear All Filters]

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

Neymotin, S. A., Kerr C., Francis J. T., & Lytton WW. (2011). Attentional modulation of receptive fields in a computer model of the thalamocortical system. Society for Neuroscience 2011 (SFN '11).

B

Neymotin, S. A., Dura-Bernal S., Suter B. A., Lakatos P., Shepherd G. M. G., & Lytton WW. (2016). Beta oscillations in neocortex: A multiscale modeling study. Society for Neuroscience 2016 (SFN '16).

Mcdougal, R. A., Newton A., Hines M. L., & Lytton WW. (2018). Building, simulating, and visualizing reaction-diffusion models with NEURON's enhanced rxd module. Society for Neuroscience 2018 (SFN '18).

C

Mcdougal, R. A., Hines M. L., & Lytton WW. (2014). Calcium 'impedance mismatch' – the role of geometry on diffusion dynamics. Society for Neuroscience 2014 (SFN '14).

Neymotin, S. A., Mcdougal R. A., Hines M. L., & Lytton WW. (2014). Calcium regulation of HCN supports persistent activity associated with working memory: A multiscale model of prefrontal cortex. Society for Neuroscience 2014 (SFN '14).

Sherif, M. A., Mcdougal R., Neymotin S., Hines M., & Lytton WW. (2013). Calcium wave propagation varies with changes in endoplasmic reticulum parameters: A computer model. Society for Neuroscience 2013 (SFN '13).

Mcdougal, R. A., Hines M. L., & Lytton WW. (2012). Calcium-electrical interactions: An example of reaction-diffusion in the neuron simulator. Society for Neuroscience 2012 (SFN '12).

Kerr, C., Dura-Bernal S., Menzies R. J., Mclauchlan C., Van Albada S. J., Kedziora D. J., et al. (2016). Computational capacity as a function of network size. Society for Neuroscience 2016 (SFN '16).

Lazarewicz, M. T., Contreras D., Finkel L. H., & Lytton WW. (2009). Computer model of a theta-gamma dissociation in hippocampus. Society for Neuroscience 2009 (SFN '09).

Sherif, M. A., Skosnik P., Hajs M., & Lytton WW. (2015). Computer model of endocannabinoid effects in CA3. Society for Neuroscience 2015 (SFN '15).

Doherty, D.. W., Dura-Bernal S.., & Lytton W.. W. (2019). Computer models of mouse area M1 show avalanches for full model and subcircuits defined by layer or cell type. Society for Neuroscience 2019 (SFN '19).

Lytton, WW., & Shepherd G. M. G. (2010). Computer network model predicts dependence of neocortical laminar activation patterns on form of stimulation. Society for Neuroscience 2010 (SFN '10).

Angulo, S., Graham J. W., Gao P., Dura-Bernal S., Neymotin S. A., Antic S. D., et al. (2017). Cortical ensembles based on dendritic plateau generation in the prefrontal cortex. Society for Neuroscience 2017 (SFN '17).

Sherif, M. A., Barry J. M., Neymotin S. A., & Lytton WW. (2012). CPP alters cross-frequency coupling between theta and gamma in CA1 in rats: Simulation and experiment. Society for Neuroscience 2012 (SFN '12).

Francis, J. T., Chapin J., Lytton WW., Barbour R., Carmena J., Principe J., et al. (2010). Creating the synthetic brain through hybrid computational and biological systems repairing and replacing neural networks. Society for Neuroscience 2010 (SFN '10).

D

Suter, B. A., Neymotin S. A., Shepherd G. M. G., & Lytton WW. (2016). Dendritic morphology of corticospinal and crossed-corticostriatal neurons in mouse primary motor cortex. Society for Neuroscience 2016 (SFN '16).

Gao, P., Graham J. W., Angulo S., Dura-Bernal S., Lytton WW., & Antic S. D. (2017). Dendritic plateau generation model in cortical pyramidal neurons: A link to cortical ensembles. Society for Neuroscience 2017 (SFN '17).

Kelley, C.., Dura-Bernal S.., Neymotin S.., & Lytton W.. W. (2019). Dendritic resonance in a detailed model of pyramidal tract neuron of mouse primary motor cortex. Society for Neuroscience 2019 (SFN '19).

Fenton, A. A., Lee H., & Lytton WW. (2009). Disinhibition can account for the neural discoordination associated with impaired cognitive control. Society for Neuroscience 2009 (SFN '09).

Neymotin, S. A., Lytton WW., Oconnell M. N., & Lakatos P. (2013). Dynamical microstates in primary auditory cortex. Society for Neuroscience 2013 (SFN '13).

E

Kerr, C., Van Albada S. J., Neymotin S. A., Chadderdon G. L., Robinson P. A., & Lytton WW. (2012). Effects of basal ganglia on cortical computation: A hybrid network/neural field model. Society for Neuroscience 2012 (SFN '12).

Newton, A.. J. H., Conte C.., Eggleston L.., Blasy E.., Hines M.. L., Lytton W.. W., et al. (2019). Efficient in silico 3D intracellular neuron simulation. Society for Neuroscience 2019 (SFN '19).

Graham, J. W., Angulo S., Gao P. P., Dura-Bernal S., Sivagnanam S., Hines M.., et al. (2018). Embedded ensemble encoding: A hypothesis for reconciling cortical coding strategies. Society for Neuroscience 2018 (SFN '18).

Mcdougal, R. A., Tropper C., Hines M. L., & Lytton WW. (2016). Expanding NEURON support for reaction-diffusion models. Society for Neuroscience 2016 (SFN '16).

G

Kubie, J. L., Fenton A. A., Lytton WW., & Burgess N. (2009). Grid-cell models for navigation and context discrimination. Society for Neuroscience 2009 (SFN '09).

H

Newton, A. J. H., Hines M. L., Lytton W. W., & McDougal R. A. (2019). Homeostasis and spreading depolarization in multiscale simulation of ischemic stroke.. Society for Neuroscience 2018 (SFN '19).

Mcdougal, R. A., Bulanova A. S., Hines M. L., & Lytton WW. (2015). Hybrid 1d/3d reaction-diffusion in the neuron simulator. Society for Neuroscience 2015 (SFN '15).

I

Doherty, D. W., Dura-Bernal S., Neymotin S. A., & Lytton WW. (2018). Identifying avalanches in simulated mouse primary motor cortex (M1). Society for Neuroscience 2018 (SFN '18).

Olypher, A. V., Fenton A. A., Lytton W. W., & Prinz A. A. (2009). Information processing in homeostatically regulated hippocampal neurons. Society for Neuroscience 2009 (SFN '09).

Neymotin, S. A., Jacobs K. M., & Lytton WW. (2009). Information transmission vs processing in computer models of neocortical columns. Society for Neuroscience 2009 (SFN '09).

Bulanova, A. S., Mcdougal R. A., Neymotin S. A., Mutai V. K., Lytton WW., & Hines M. L. (2014). Integrating Systems Biology Markup Language (SBML) with NEURON. Society for Neuroscience 2014 (SFN '14).

Hines, M. L., Mcdougal R., Neymotin S. A., Tropper C., & Lytton WW. (2013). Interfaces in multiscale reaction-diffusion models in the NEURON simulator. Society for Neuroscience 2013 (SFN '13).

Dura-Bernal, S., Zhou X., Chadderdon G. L., Przekwas A., & Lytton WW. (2013). Interfacing a biomimetic model of sensorimotor cortex with a musculoskeletal model and a robotic arm. Society for Neuroscience 2013 (SFN '13).

L

Dura-Bernal, S., Neymotin S. A., Suter B. A., Shepherd G. M., & Lytton WW. (2017). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits. Society for Neuroscience 2017 (SFN '17).

M

Newton, A., Mcdougal R. A., Hines M. L., Miyazaki K., Ross W. N., & Lytton WW. (2017). Modeling electrodiffusion with the NEURON reaction-diffusion module. Society for Neuroscience 2017 (SFN '17).

Graham, J.. W., Gao P.. P., Dura-Bernal S.., Sivagnanam S.., Hines M.. L., Antic S.. D., et al. (2019). Modeling network effects of dendritic plateau potentials in cortical pyramidal neurons. Society for Neuroscience 2019 (SFN '19).

Seidenstein, A., Mcdougal R. A., Hines M. L., & Lytton WW. (2016). Mosaic multiscale computer modeling of ischemic stroke. Society for Neuroscience 2016 (SFN '16).

Seidenstein, A., Newton A., Macdougal R. A., & Lytton WW. (2017). Multiscale computer modeling of penumbral zones in brain ischemia. Society for Neuroscience 2017 (SFN '17).

Lytton, WW. (2018). Multiscale modeling of brain disease. Society for Neuroscience 2018 (SFN '18).

Newton, A., Seidenstein A. H., Hines M. L., Mcdougal R. A., & Lytton WW. (2018). Multiscale simulation of spreading depolarization in ischemic stroke. Society for Neuroscience 2018 (SFN '18).

N

Dura-Bernal, S., Suter B. A., Quintana A., Cantarelli M., Gleeson P., Rodriguez F., et al. (2018). NetPyNE: A GUI-based tool to build, simulate and analyze large-scale, data-driven network models in parallel NEURON. Society for Neuroscience 2018 (SFN '18).

Mohan, A., Chadderdon G. L., Suter B. A., Shepherd G. M. G., & Lytton WW. (2013). Network-level coincidence detection in a computer simulation of primary motor cortex. Society for Neuroscience 2013 (SFN '13).

Park, E.., Neymotin S.., Lytton W.., & Fenton A.. A. (2009). Neural discoordination of hippocampus and prefrontal cortex spike trains in a phencyclidine schizophrenia-related animal model. Society for Neuroscience 2009 (SFN '09).

Seidenstein, A., Neymotin S. A., Fesharaki A., Hines M. L., Mcdougal R. A., Bulanova A. S., et al. (2015). Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex. Society for Neuroscience 2015 (SFN '15).

Dura-Bernal, S., Suter B. A., Neymotin S. A., Quintana A., Gleeson P., Sheperd G. M. G., et al. (2015). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model. Society for Neuroscience 2015 (SFN '15).

O

Mcdougal, R. A., Lytton WW., & Hines M. L. (2011). Object-oriented reaction-diffusion modeling in the neuron simulator. Society for Neuroscience 2011 (SFN '11).

Kerr, C., Choi J. S., Dura-Bernal S., Francis J. T., & Lytton WW. (2014). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models. Society for Neuroscience 2014 (SFN '14).

P

Tropper, C., Zhongwei L., Mcdougal R. A., Hines M., & Lytton WW. (2015). Parallel reaction-diffusion simulation in NEURON. Society for Neuroscience 2015 (SFN '15).

Tropper, C., Patoary M. N. I., Mcdougal R. A., Hines M. L., & Lytton WW. (2013). Parallel stochastic simulation of neuronal reaction-diffusion equations. Society for Neuroscience 2013 (SFN '13).

Mcdougal, R. A., Newton A. J. H., Patoary M. N. I., Tropper C., Hines M. L., & Lytton WW. (2017). Parallel stochastic spines in NEURON reaction-diffusion simulations. Society for Neuroscience 2017 (SFN '17).

R

Kerr, C., Von Kraus L., Iordanou J., Neymotin S. A., Francis J., & Lytton WW. (2013). Receptive field formation and erasure in somatosensory cortex. Society for Neuroscience 2013 (SFN '13).

Gao, P. P., Graham J. W., Angulo S. L., Dura-Bernal S., Hines M. L., Lytton WW., et al. (2018). Recruitment of neurons into neural ensembles based on dendritic plateau potentials. Society for Neuroscience 2018 (SFN '18).

Neymotin, S. A., Fenton A. A., & Lytton WW. (2010). Recurrence of correlation structure in hippocampal neuronal ensembles during spatial behavior. Society for Neuroscience 2010 (SFN '10).

Neymotin, S. A., Chadderdon G. L., Kerr C. C., Francis J. T., & Lytton WW. (2012). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensory and motor cortex. Society for Neuroscience 2012 (SFN '12).

Dura-Bernal, S.., Neymotin S.. A., Suter B.. A., Kelley C.., Tekin R.., Shepherd G.. M., et al. (2019). Response to simultaneous long-range inputs and oscillatory inputs in a multiscale model of M1 microcircuits. Society for Neuroscience 2019 (SFN '19).

S

Sherif, M. A., Neymotin S. A., & Lytton WW. (2016). Schizophrenia genome-wide association studied with computer simulation: gamma oscillations and information flow in CA3. Society for Neuroscience 2016 (SFN '16).

Lytton, WW., Knox A., & Rosenthal J. J. C. (2017). Site-directed mRNA editing of sodium channels has potential to alter neuronal firing and network dynamics: Computer models. Society for Neuroscience 2017 (SFN '17).

Tropper, C., Pataory M., Mcdougal R., Hines M., & Lytton WW. (2014). Stochastic diffusion simulation in NEURON. Society for Neuroscience 2014 (SFN '14).

T

Lakatos, P., Barczak A., Neymotin S. A., Lytton WW., Mcginnis T., Javitt D. C., et al. (2014). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system. Society for Neuroscience 2014 (SFN '14).

Neymotin, S.. A., Barczak A.., Oconnell M.. N., Mcginnis T.., Markowitz N.., Espinal E.., et al. (2019). Tracking rhythmicity of neural oscillations in the auditory thalamocortical system. Society for Neuroscience 2019 (SFN '19).

Olypher, A. V., Lytton WW., & Prinz A. A. (2010). Transformation of inputs in a model of the rat hippocampal CA1 network. Society for Neuroscience 2010 (SFN '10).

U

Bernard, C. (2018). Understanding epilepsy across spatial and time scales. Society for Neuroscience 2018 (SFN '18).