Lab Publications | Neurosim lab

Found 212 results

Filters: Author is WW Lytton [Clear All Filters]

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

E

Dura-Bernal, S., Prins N., Neymotin S., Prasad A., Sanchez J., Francis JT., et al. (2014). Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm.. Neural Control of Movement.

Dura-Bernal, S., Neymotin S., Kerr CC., Sivagnanam S., Majumdar A., Francis JT., et al. (2017). Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development. 61, 6–1.

Mcdougal, R. A., Tropper C., Hines M. L., & Lytton WW. (2016). Expanding NEURON support for reaction-diffusion models. Society for Neuroscience 2016 (SFN '16).

F

Lytton, WW. (2002). From Computer to Brain.

G

Kapur, A., Pearce R., Lytton WW., & L H. (1997). \gabaa-mediated IPSCs in piriform cortex have fast and slow components with different properties and locations on pyramidal cells: Study with physiological and modeling methods. jnphys. 78, 2531-2545.

Neymotin, S., Sherif M. A., Jung J. Q., Kabariti J. J., & Lytton WW. (2018). Genome-wide associations of schizophrenia studied with computer simulation. (Cutsuridis, V., Graham BP., Cobb S., & Vida I., Ed.).Hippocampal Microcircuits: A Computational Modeler's Resource Book. 2,

Kubie, J. L., Fenton A. A., Lytton WW., & Burgess N. (2009). Grid-cell models for navigation and context discrimination. Society for Neuroscience 2009 (SFN '09).

H

Mcdougal, R. A., Bulanova A. S., Hines M. L., & Lytton WW. (2015). Hybrid 1d/3d reaction-diffusion in the neuron simulator. Society for Neuroscience 2015 (SFN '15).

Lytton, WW., & Hines M. (2004). Hybrid neural networks - combining abstract and realistic neural units. IEEE Engineering in Medicine and Biology Society Proceedings. 6, 3996-3998.

I

Doherty, D. W., Dura-Bernal S., Neymotin S. A., & Lytton WW. (2018). Identifying avalanches in simulated mouse primary motor cortex (M1). Society for Neuroscience 2018 (SFN '18).

Neymotin, S., Hilscher MM., Moulin TC., Skolnick Y., Lazarewicz MT., & Lytton WW. (2013). Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model. PLoS One. 8, e76285.

Briska, AM., Uhlrich DJ., & Lytton WW. (2000). Independent dendritic domains in the thalamic circuit. Neurocomputing. 32, 299–305.

Lytton, WW., & Hines M. (2005). Independent variable timestep integration of individual neurons for network simulations. 17, 903-921.

Kerr, C. C., O'Shea D. J., Goo W., Dura-Bernal S., Diester I., Kalanithi P., et al. (2014). Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment. Neural Control of Movement (NCM) meeting.

Neymotin, S. A., Jacobs K. M., & Lytton WW. (2009). Information transmission vs processing in computer models of neocortical columns. Society for Neuroscience 2009 (SFN '09).

Deyo, S., & Lytton WW. (1997). Inhibition Can Disrupt Hypersynchrony In Model Neuronal Networks. Progress in neuro-psychopharmacology & biological psychiatry.

Olypher, AV., Lytton WW., & Prinz AA. (2012). Input-to-output transformation in a model of the rat hippocampal CA1 network. Front Comput Neurosci. 6, 57.

Bulanova, AS., McDougal RA., Neymotin SA., Mutai V., Lytton WW., & Hines M. (2014). Integrating Systems Biology Markup Language (SBML) with NEURON. Computational Neuroscience.

Bulanova, A. S., Mcdougal R. A., Neymotin S. A., Mutai V. K., Lytton WW., & Hines M. L. (2014). Integrating Systems Biology Markup Language (SBML) with NEURON. Society for Neuroscience 2014 (SFN '14).

Hines, M. L., Mcdougal R., Neymotin S. A., Tropper C., & Lytton WW. (2013). Interfaces in multiscale reaction-diffusion models in the NEURON simulator. Society for Neuroscience 2013 (SFN '13).

Dura-Bernal, S., Zhou X., Chadderdon G. L., Przekwas A., & Lytton WW. (2013). Interfacing a biomimetic model of sensorimotor cortex with a musculoskeletal model and a robotic arm. Society for Neuroscience 2013 (SFN '13).

Neymotin, S., Lee HY., Fenton AA., & Lytton WW. (2010). Interictal EEG Discoordination in a Rat Seizure Model. J Clin Neurophysiol. 27, 438–444.

Neymotin, SA., H L., AA F., & Lytton WW. (2010). Interictal EEG discoordination in a rat seizure model. Statistical Analysis of Neuronal Data.

Kerr, CC., Neymotin SA., Mo J., Schroeder CE., M D., & Lytton WW. (2011). Interlaminar feedback connections dominate in macaque inferotemporal cortex: in vivo and in silico studies. Society for Neuroscience.

Kerr, CC., Mo J., Neymotin SA., M D., & Lytton WW. (2011). Interlaminar Granger causality and alpha oscillations in a model of macaque cortex. Computational Neuroscience.

Zhu, JJ., Lytton WW., Xue JT., & Uhlrich D. (1999). An intrinsic oscillation in interneurons of the rat lateral geniculate nucleus. jnphys. 81, 702-711.

J

Lytton, WW., Omurtag A., Neymotin S., & Hines ML. (2008). Just-in-time connectivity for large spiking networks. ncomp. 20, 2745-2756.

K

Neymotin, S., Lazarewicz MT., Sherif M., Contreras D., Finkel LH., & Lytton WW. (2011). Ketamine disrupts theta modulation of gamma in a computer model of hippocampus. J Neurosci. 31, 11733-11743.

L

Dura-Bernal, S., Kerr C., Neymotin S., Suter B., Shepherd G., Francis J., et al. (2015). Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control. 24th Annual Computational Neuroscience Meeting (CNS15).

Lin, Z., Tropper C., Yao Y., McDougal R. A., Patoary MN., Lytton WW., et al. (2017). Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons. J Simulation. 11, 267.

Orman, R., Von Gizycki G., Lytton WW., & Stewart M. (2008). Local axon collaterals of area ca1 support spread of epileptiform discharges within CA1, but propagation is unidirectional. Hippocampus. 18, 1021-1033.

Lytton, WW., & Kristan WB. (1989). Localization of a leech inhibitory synapse by photo-ablation of individual dendrites. 504, 43-48.

Dura-Bernal, S., Neymotin S., Suter BA., Shepherd GMG., & Lytton WW. (2018). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits. bioRxiv.

Dura-Bernal, S., Neymotin S. A., Suter B. A., Shepherd G. M., & Lytton WW. (2017). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits. Society for Neuroscience 2017 (SFN '17).

M

Womack, KB., Paliotta C., Strain JF., Ho JS., Skolnick Y., Lytton WW., et al. (2017). Measurement of peripheral vision reaction time identifies white matter disruption in patients with mild traumatic brain injury. J Neurotrauma.

Neymotin, S., Lytton WW., Olypher AO., & AA F. (2011). Measuring the quality of neuronal identification in ensemble recordings. jnsci. 31, 16398–16409.

McDougal, RA., Hines ML., & Lytton WW. (2014). A method for multi-simulator reaction-diffusion with NEURON. Computational Neuroscience.

Neymotin, SA., Salvador D-B., Suter BA., Migliore M., Shepherd GMG., & Lytton WW. (2015). Microconnectomics of primary motor cortex: a multiscale computer model. Multiscale Modeling. National Institutes of Health.

Newton, A., Mcdougal R. A., Hines M. L., Miyazaki K., Ross W. N., & Lytton WW. (2017). Modeling electrodiffusion with the NEURON reaction-diffusion module. Society for Neuroscience 2017 (SFN '17).

Taxin, ZH., Neymotin S., Mohan A., Lipton P., & Lytton WW. (2014). Modeling molecular pathways of neuronal ischemia. Prog Mol Biol Transl Sci. 123, 249–275.

Knox, A. T., Glauser T., Tenney J., Lytton WW., & Holland K. (2018). Modeling pathogenesis and treatment response in childhood absence epilepsy. Epilepsia. 59, 135–145.

Lytton, WW., & Thomas E. (1999). Modeling thalamocortical oscillations. (Ulinski, P., Jones EG., & Peters A., Ed.).Cerebral Cortex. 13, 479-509.

Kerr, CC., Neymotin SA., Song W., Francis JT., & Lytton WW. (2011). Modulation of stimulus fields in a computer model of the thalamocortical system. Society for Neuroscience.

Dura-Bernal, S., Li K., Brockmeier A., Kerr C., Neymotin S., Principe J., et al. (2014). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex. BMC Neuroscience. 15, P106.

Seidenstein, A., Mcdougal R. A., Hines M. L., & Lytton WW. (2016). Mosaic multiscale computer modeling of ischemic stroke. Society for Neuroscience 2016 (SFN '16).

Chadderdon, GL., Mohan A., Suter BA., Neymotin S., Kerr CC., Francis JT., et al. (2014). Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput. 26, 1239–1262.

Neymotin, SA., BA S., Migliore M., Salvador D-B., Shepherd GMG., & Lytton WW. (2015). Motor cortex neurons: from experiment to model via evolutionary algorithms. Computational Neuroscience.

Lytton, WW., Vadigepalli R., & Kramer MA. (2015). Multiscale Computational Modeling for the US BRAIN initiative.

Seidenstein, A., Newton A., Macdougal R. A., & Lytton WW. (2017). Multiscale computer modeling of penumbral zones in brain ischemia. Society for Neuroscience 2017 (SFN '17).

Lytton, WW., Neymotin S., & Kerr CC. (2014). Multiscale modeling for clinical translation in neuropsychiatric disease. J Comput Surgery. 1, 7.

Lytton, WW., Arle J., Bobashev G., Ji S., Klassen TL., Marmarelis VZ., et al. (2017). Multiscale modeling in the clinic: diseases of the brain and nervous system. Brain Inform. 4, 219-230.

Lytton, WW. (2018). Multiscale modeling of brain disease. Society for Neuroscience 2018 (SFN '18).

Newton, A., Seidenstein A. H., Hines M. L., Mcdougal R. A., & Lytton WW. (2018). Multiscale simulation of spreading depolarization in ischemic stroke. Society for Neuroscience 2018 (SFN '18).

Neymotin, S., Dura-Bernal S., Lakatos P., Sanger TD., & Lytton WW. (2016). Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex. Front Pharmacol. 7, 157.

Lin, Z., Tropper C., McDougal R. A., Patoary M. Nazrul Ish, Lytton WW., Yao Y., et al. (2017). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons. ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.

Zhu, JJ., Uhlrich D., & Lytton WW. (1996). Muscarinic receptor mediated responses in thalamic local interneurons. snabs. 22, 574.8.

N

Lytton, WW., Neymotin S., Wester JC., & Contreras D. (2014). Neocortical simulation for epilepsy surgery guidance: localization and intervention. (Bass, B., & Garbey M., Ed.).Computational Surgery and Dual Training. 339–349.

Dura-Bernal, S., Suter B. A., Quintana A., Cantarelli M., Gleeson P., Rodriguez F., et al. (2018). NetPyNE: A GUI-based tool to build, simulate and analyze large-scale, data-driven network models in parallel NEURON. Society for Neuroscience 2018 (SFN '18).

Dura-Bernal, S., BA S., Kerr C. C., Quintana A., Gleeson P., Shepherd GMG., et al. (2016). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks. Computational Neuroscience.

Mohan, A., Chadderdon G. L., Suter B. A., Shepherd G. M. G., & Lytton WW. (2013). Network-level coincidence detection in a computer simulation of primary motor cortex. Society for Neuroscience 2013 (SFN '13).

Kerr, CC., O'Shea DJ., Goo W., Dura-Bernal S., Francis JT., Diester I., et al. (2014). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex. BMC Neuroscience. 15, P107.

Lytton, WW. (2006). Neural query system: data-mining from within the NEURON simulator. Neuroinformatics. 4, 163-176.

Patoary, M. Nazrul Ish, Tropper C., Lin Z., McDougal R. A., & Lytton WW. (2014). Neuron time warp. Simulation Conference (WSC), 2014 Winter. 3447–3458.

Neymotin, S., McDougal R. A., Sherif MA., Fall CP., Hines ML., & Lytton WW. (2015). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. Neural Comput. 27, 898–924.

Seidenstein, A., Neymotin S. A., Fesharaki A., Hines M. L., Mcdougal R. A., Bulanova A. S., et al. (2015). Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex. Society for Neuroscience 2015 (SFN '15).

Dura-Bernal, S., Gleeson P., Kerr C., Graham J., Quintana A., & Lytton WW. (2018). Neurosim-lab/netpyne: v0.7.7.

Dura-Bernal, S., Suter B. A., Neymotin S. A., Quintana A., Gleeson P., Sheperd G. M. G., et al. (2015). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model. Society for Neuroscience 2015 (SFN '15).

Lin, Z., Tropper C., Patoary M. Nazrul Ish, McDougal R. A., Lytton WW., & Hines M. L. (2015). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron. Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.

O

Mcdougal, R. A., Lytton WW., & Hines M. L. (2011). Object-oriented reaction-diffusion modeling in the neuron simulator. Society for Neuroscience 2011 (SFN '11).

Kerr, C., Choi J. S., Dura-Bernal S., Francis J. T., & Lytton WW. (2014). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models. Society for Neuroscience 2014 (SFN '14).

Neymotin, S., Suter BA., Dura-Bernal S., Shepherd GM., Migliore M., & Lytton WW. (2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol. 117, 148-162.

Neymotin, SA., Suter BA., Migliore M., Salvador D-B., Shepherd GMG., & Lytton WW. (2015). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings. Society for Neuroscience.

Lytton, WW. (1996). Optimizing synaptic conductance calculation for network simulations. ncomp. 8, 501-510.

Zhu, JJ., Uhlrich D., & Lytton WW. (1995). Oscillations in Thalamic Interneurons. snabs. 21, 12.5.

P

Migliore, M., Cannia C., Lytton WW., & Hines ML. (2006). Parallel Network Simulations with NEURON. J. Computational Neuroscience. 6, 119-129.