Lab Publications
Schizophrenia genome-wide association studied with computer simulation: gamma oscillations and information flow in CA3.
Society for Neuroscience 2016 (SFN '16).
(2016). The role of feedback in a hierarchical model of object perception.
Proceedings of BICS 2010 - Brain Inspired Cognitive Systems 14-16 July 2010, Madrid, Spain..
(2010). Restoring physiological oscillations using neuroprosthetic spike-timing-dependent plasticity in computer model of neocortex.
Society for Neuroscience.
(2011). Response to simultaneous long-range inputs and oscillatory inputs in a multiscale model of M1 microcircuits.
Society for Neuroscience 2019 (SFN '19).
(2019). Repairing lesions via microstimulation in a spiking network model driving a virtual arm..
Society for Neuroscience.
(2014). Repairing Lesions via Kernel Adaptive Inverse Control in a Biomimetic Model of Sensorimotor Cortex.
Neural Engineering (NER), 2015 7th International IEEE/EMBS Conference. 1-4.
(2015). Reinforcement learning of 2-joint virtual arm reaching in motor cortex simulation.
Computational Neuroscience Meeting (CNS '12).
(2012). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation.
Neural Control of Movement.
(2012). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensory and motor cortex.
Society for Neuroscience 2012 (SFN '12).
(2012). Recurrence of correlation structure in hippocampal neuronal ensembles during spatial behavior.
Society for Neuroscience 2010 (SFN '10).
(2010). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Society for Neuroscience 2018 (SFN '18).
(2018). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Computational Neuroscience Meeting (CNS 18').
(2018). Receptive field formation and erasure in somatosensory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Reaction-diffusion modeling in the NEURON simulator.
Computational Neuroscience.
(2012). Parallelizing large networks using NEURON-Python.
BMC Neuroscience.
(2015). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2017). Parallel stochastic simulation of neuronal reaction-diffusion equations.
Society for Neuroscience 2013 (SFN '13).
(2013). Parallel reaction-diffusion simulation in NEURON.
Society for Neuroscience 2015 (SFN '15).
(2015). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings.
Society for Neuroscience.
(2015). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models.
Society for Neuroscience 2014 (SFN '14).
(2014). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2011). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model.
Society for Neuroscience 2015 (SFN '15).
(2015). Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex.
Society for Neuroscience 2015 (SFN '15).
(2015). Neuron time warp.
Simulation Conference (WSC), 2014 Winter. 3447–3458.
(2014). Neural discoordination of hippocampus and prefrontal cortex spike trains in a phencyclidine schizophrenia-related animal model.
Society for Neuroscience 2009 (SFN '09).
(2009). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
Computational Neuroscience Meeting (CNS 14').
(2014). Network-level coincidence detection in a computer simulation of primary motor cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience Meeting (CNS 16').
(2016). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience.
(2016). NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models.
Computational Neuroscience Meeting (CNS 18').
(2018). NetPyNE: A GUI-based tool to build, simulate and analyze large-scale, data-driven network models in parallel NEURON.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale simulation of spreading depolarization in ischemic stroke.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale modeling of multitarget pharmacotherapy for dystonia.
Computational Neuroscience Meeting (CNS 16').
(2016). Multiscale modeling of cortical information flow in Parkinson's disease.
Computational Neuroscience Meeting (CNS '13).
(2013). Multiscale modeling of brain disease.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale computer modeling of penumbral zones in brain ischemia.
Society for Neuroscience 2017 (SFN '17).
(2017). Motor cortex neurons: from experiment to model via evolutionary algorithms.
Computational Neuroscience.
(2015). Mosaic multiscale computer modeling of ischemic stroke.
Society for Neuroscience 2016 (SFN '16).
(2016). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex.
Computational Neuroscience Meeting (CNS '14). 15, P106.
(2014). Modulation of stimulus fields in a computer model of the thalamocortical system.
Society for Neuroscience.
(2011). Modeling network effects of dendritic plateau potentials in cortical pyramidal neurons.
Society for Neuroscience 2019 (SFN '19).
(2019). Modeling electrodiffusion with the NEURON reaction-diffusion module.
Society for Neuroscience 2017 (SFN '17).
(2017). Microconnectomics of primary motor cortex: a multiscale computer model.
Multiscale Modeling. National Institutes of Health.
(2015). A method for multi-simulator reaction-diffusion with NEURON.
Computational Neuroscience.
(2014). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits.
Society for Neuroscience 2017 (SFN '17).
(2017). Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control.
24th Annual Computational Neuroscience Meeting (CNS15).
(2015). Just-in-time connectivity for very large neuronal networks.
Computational Neuroscience Meeting (CNS 07').
(2007). Interlaminar Granger causality and alpha oscillations in a model of macaque cortex.
Computational Neuroscience.
(2011). Interlaminar feedback connections dominate in macaque inferotemporal cortex: in vivo and in silico studies.
Society for Neuroscience.
(2011). Interictal EEG discoordination in a rat seizure model.
Statistical Analysis of Neuronal Data.
(2010). Interfacing a biomimetic model of sensorimotor cortex with a musculoskeletal model and a robotic arm.
Society for Neuroscience 2013 (SFN '13).
(2013). Interfaces in multiscale reaction-diffusion models in the NEURON simulator.
Society for Neuroscience 2013 (SFN '13).
(2013). Integrating Systems Biology Markup Language (SBML) with NEURON.
Computational Neuroscience.
(2014). Integrating Systems Biology Markup Language (SBML) with NEURON.
Society for Neuroscience 2014 (SFN '14).
(2014). Information transmission vs processing in computer models of neocortical columns.
Society for Neuroscience 2009 (SFN '09).
(2009). Information processing in homeostatically regulated hippocampal neurons.
Society for Neuroscience 2009 (SFN '09).
(2009). Implementation of Cmicrocircuits model in NetPyNE and exploration of the effect of neuronal/synaptic loss on memory recall.
Computational Neuroscience Meeting (CNS 18').
(2018). Ih modulates theta rhythm and synchrony in computer model of CA3.
Computational Neuroscience Meeting (CNS 12').
(2012). Identifying avalanches in simulated mouse primary motor cortex (M1).
Society for Neuroscience 2018 (SFN '18).
(2018). Hybrid 1d/3d reaction-diffusion in the neuron simulator.
Society for Neuroscience 2015 (SFN '15).
(2015).
(2011). Homeostasis and spreading depolarization in multiscale simulation of ischemic stroke..
Society for Neuroscience 2018 (SFN '19).
(2019). Grid-cell models for navigation and context discrimination.
Society for Neuroscience 2009 (SFN '09).
(2009). Geppetto: an open source visualisation and simulation platform for neuroscience.
Computational Neuroscience Meeting (CNS 17').
(2017). Extracellular reaction–diffusion in the NEURON simulator: modeling ischemic stroke.
Computational Neuroscience Meeting (CNS 18').
(2018). Expanding NEURON support for reaction-diffusion models.
Society for Neuroscience 2016 (SFN '16).
(2016). Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm..
Neural Control of Movement.
(2014). Emergent oscillations in neocortex: a simulation study.
Dynamical Neuroscience XVIII: The Resting Brain: Not at Rest! Satellite meeting for Society for Neuroscience Meeting.
(2010). Embedded ensemble encoding: A hypothesis for reconciling cortical coding strategies.
Society for Neuroscience 2018 (SFN '18).
(2018). Efficient in silico 3D intracellular neuron simulation.
Society for Neuroscience 2019 (SFN '19).
(2019). Effects of basal ganglia on cortical computation: a hybrid network/neural field model.
Society for Neuroscience.
(2012). Effects of basal ganglia on cortical computation: A hybrid network/neural field model.
Society for Neuroscience 2012 (SFN '12).
(2012). Effect of network size on computational capacity.
Computational Neuroscience Meeting (CNS 16').
(2016). Dynamical microstates in primary auditory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013).