Lab Publications
]
(2008). Virtual slice simulation of resonance in a layered cortical model.
socns. 769, 25.
(2008). The virtual slice setup.
J Neurosci Methods. 171, 309-315.
(2013). Virtual musculoskeletal arm and robotic arm driven by a biomimetic model of sensorimotor cortex with reinforcement learning.
Signal Processing in Medicine and Biology Symposium (SPMB), 2013 IEEE. 1-5.
(2011). Training oscillatory dynamics with spike-timing-dependent plasticity in a computer model of neocortex.
2011 IEEE Signal Processing in Medicine and Biology Symposium (SPMB). 1–6.
(2017). Tracking recurrence of correlation structure in neuronal recordings.
J Neurosci Methods. 275, 1-9.
(2014). Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm.
Pattern Recognit Lett. 36, 204–212.
(2014). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience Abstracts. 44,
(2013). Synaptic scaling balances learning in a spiking model of neocortex.
Springer LNCS. 7824, 20–29.
(2011). Synaptic information transfer in computer models of neocortical columns.
J Comput Neurosci. 30, 69-84.
(2008). Standardized assessment of extracellular single unit isolation quality.
socns. 690, 12.
(2016). Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm.
Front Neurosci. 10, 28.
(2014). Repairing lesions via microstimulation in a spiking network model driving a virtual arm..
Society for Neuroscience.
(2012). Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex.
PLoS One. 7, e47251.
(2013). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex.
Neural Comput. 25, 3263–3293.
(2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
J Neurophysiol. 117, 148-162.
(2015). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.
Neural Comput. 27, 898–924.
(2018). NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models.
Computational Neuroscience Meeting (CNS 18').
(2014). Neocortical simulation for epilepsy surgery guidance: localization and intervention.
(Bass, B., & Garbey M., Ed.).Computational Surgery and Dual Training. 339–349.
(2016). Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex.
Front Pharmacol. 7, 157.
(2014). Multiscale modeling for clinical translation in neuropsychiatric disease.
J Comput Surgery. 1, 7.
(2014). Motor cortex microcircuit simulation based on brain activity mapping.
Neural Comput. 26, 1239–1262.
(2014). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex.
BMC Neuroscience. 15, P106.
(2014). Modeling molecular pathways of neuronal ischemia.
Prog Mol Biol Transl Sci. 123, 249–275.
(2011). Measuring the quality of neuronal identification in ensemble recordings.
jnsci. 31, 16398–16409.
(2018). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits.
bioRxiv.
(2015). Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control.
24th Annual Computational Neuroscience Meeting (CNS15).
(2011). Ketamine disrupts theta modulation of gamma in a computer model of hippocampus.
J Neurosci. 31, 11733-11743.
(2008). Just-in-time connectivity for large spiking networks.
ncomp. 20, 2745-2756.
(2010). Interictal EEG Discoordination in a Rat Seizure Model.
J Clin Neurophysiol. 27, 438–444.
(2015). Impaired dendritic inhibition leads to epileptic activity in a computer model of CA3.
Hippocampus. in press.
(2013). Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model.
PLoS One. 8, e76285.
(2016). Global dynamics of selective attention and its lapses in primary auditory cortex.
Nat Neurosci. In press.
(2018). Genome-wide associations of schizophrenia studied with computer simulation.
(Cutsuridis, V., Graham BP., Cobb S., & Vida I., Ed.).Hippocampal Microcircuits: A Computational Modeler's Resource Book. 2,
(2017). Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.
IBM Journal of Research and Development. 61, 6–1.
(2014). Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm..
Neural Control of Movement.
(2011). Emergence of physiological oscillation frequencies in a computer model of neocortex.
Front Comput Neurosci. 5, 19.
(2014). Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease.
Front Comput Neurosci. 8, 39.
(2012). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex.
IEEE Trans Neural Syst Rehab Eng. 20, 153–60.
(2016). Effect of network size on computational capacity.
Computational Neuroscience Meeting (CNS 16').
(2013). Dynamical microstates in primary auditory cortex.
Society for Neuroscience Abstracts. 43,
(2015). A dynamic data-driven approach to closed-loop neuroprosthetics based on multiscale biomimetic brain models.
IEEE Interanationl Conference on High Performance Computing 2015 Workshop: InfoSymbiotics/Dynamic Data Driven Applications Systems (DDDAS) for Smarter Systems, Bangalore, India.
(2008). Data mining of time-domain features from neural extracellular field data.
Studies in Computational Intelligence. 151, 119-140.
(2015). Cortical spiking network interfaced with virtual musculoskeletal arm and robotic arm.
Frontiers in Neurorobotics. 9,
(2013). Cortical information flow in Parkinson's disease: a composite network/field model.
Front Comput Neurosci. 7, 39.
(2017). Computer modeling for pharmacological treatments for dystonia.
Drug Discov Today: Dis Model. In Press.
(2013). Computational Neuroscience of Neuronal Networks.
(Pfaff, D., Ed.).
(2014). Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity.
Front Neural Circuits. 8, 16.
(2008). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting. 3, 284.
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
BMC Neuroscience. 15, P108.
(2016). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.
Neurosci. 316, 344-366.
(2013). Brain Ischemia and Stroke.
(Jaeger, D., & Jang R., Ed.).Encyclopedia of Computational Neuroscience.