Lab Publications

Found 36 results
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2019
Angulo, S. L., Henzi T., Neymotin S. A., Suarez M. D., Lytton W. W., Schwaller B., et al. (2019).  Amyloid pathology–produced unexpected modifications of calcium homeostasis in hippocampal subicular dendrites. Alzheimers. Dement..
Dura-Bernal, S., Suter B. A., Gleeson P., Cantarelli M., Quintana A., Rodriguez F., et al. (2019).  NetPyNE, a tool for data-driven multiscale modeling of brain circuits. eLife. 8, e44494.
Patoary, M. Nazrul Ish, Tropper C., McDougal R. A., Lin Z., & Lytton W. W. (2019).  Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron. IEEE/ACM Trans. Comput. Biol. Bioinform.. 16, 1007–1019.
2018
Mulugeta, L., Drach A., Erdemir A., Hunt C. A., Horner M., Ku J. P., et al. (2018).  Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. Front. Neuroinform.. 12,
Mulugeta, L., Drach A., Erdemir A., Hunt C. A., Horner M., Ku J. P., et al. (2018).  Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. Front. Neuroinform.. 12,
Cantarelli, M., Marin B., Quintana A., Earnshaw M., Gleeson P., Dura-Bernal S., et al. (2018).  Geppetto: a reusable modular open platform for exploring neuroscience data and models. Phil. Trans. R. Soc. B. 373, 20170380.
Gleeson, P., Cantarelli M., Marin B., Quintana A., Earnshaw M., Piasini E., et al. (2018).  Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits. bioRxiv. 229484.
C Hunt, A., Erdemir A., Gabhann F. Mac, Lytton WW., Sander E. A., Transtrum M. K., et al. (2018).  The Spectrum of Mechanism-oriented Models for Explanations of Biological Phenomena.
Newton, A. J. H., McDougal R. A., Hines M. L., & Lytton W. W. (2018).  Using NEURON for reaction-diffusion modeling of extracellular dynamics. Frontiers in Neuroinformatics.
2017
Neymotin, S., Dura-Bernal S., Moreno H., & Lytton WW. (2017).  Computer modeling for pharmacological treatments for dystonia. Drug Discov Today: Dis Model. In Press.
Dura-Bernal, S., Neymotin S., Kerr CC., Sivagnanam S., Majumdar A., Francis JT., et al. (2017).  Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development. 61, 6–1.
Lin, Z., Tropper C., Yao Y., McDougal R. A., Patoary MN., Lytton WW., et al. (2017).  Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons. J Simulation. 11, 267.
Womack, KB., Paliotta C., Strain JF., Ho JS., Skolnick Y., Lytton WW., et al. (2017).  Measurement of peripheral vision reaction time identifies white matter disruption in patients with mild traumatic brain injury. J Neurotrauma.
Lytton, WW., Arle J., Bobashev G., Ji S., Klassen TL., Marmarelis VZ., et al. (2017).  Multiscale modeling in the clinic: diseases of the brain and nervous system. Brain Inform. 4, 219-230.
Lin, Z., Tropper C., McDougal R. A., Patoary M. Nazrul Ish, Lytton WW., Yao Y., et al. (2017).  Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons. ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.
Neymotin, S., Suter BA., Dura-Bernal S., Shepherd GM., Migliore M., & Lytton WW. (2017).  Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol. 117, 148-162.
Patoary, M. Nazrul Ish, Tropper C., McDougal R. A., Zhongwei L., & Lytton WW. (2017).  Parallel Stochastic discrete event simulation of calcium dynamics in neuron.. IEEE/ACM transactions on computational biology and bioinformatics.
2016
Neymotin, S., McDougal R. A., Bulanova AS., Zeki M., Lakatos P., Terman D., et al. (2016).  Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neurosci. 316, 344-366.
Lakatos, P., Barczak A., Neymotin S., McGinnis T., Ross D., Javitt DC., et al. (2016).  Global dynamics of selective attention and its lapses in primary auditory cortex. Nat Neurosci. In press.
McDougal, R. A., Bulanova AS., & Lytton WW. (2016).  Reproducibility in computational neuroscience models and simulations. {IEEE} Trans Biomed Eng. 63, 2021-2035.
Lytton, WW., Seidenstein AH., Dura-Bernal S., McDougal R. A., Schürmann F., & Hines ML. (2016).  Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON. Neural Comput. 28, 2063-2090.
2015
Neymotin, S., McDougal R. A., Sherif MA., Fall CP., Hines ML., & Lytton WW. (2015).  Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. Neural Comput. 27, 898–924.
2014
Neymotin, S., McDougal R. A., Hines ML., & Lytton WW. (2014).  Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex. BMC Neuroscience. 15, P108.
Taxin, ZH., Neymotin S., Mohan A., Lipton P., & Lytton WW. (2014).  Modeling molecular pathways of neuronal ischemia. Prog Mol Biol Transl Sci. 123, 249–275.
Chadderdon, GL., Mohan A., Suter BA., Neymotin S., Kerr CC., Francis JT., et al. (2014).  Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput. 26, 1239–1262.
Lakatos, P., Barczak A., Neymotin S., Lytton WW., McGinnis T., Javitt D., et al. (2014).  Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system. Society for Neuroscience Abstracts. 44,
Lee, GJ., Matsunaga A., Dura-Bernal S., Zhang W., Lytton WW., Francis JT., et al. (2014).  Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models. Journal of Computational Surgery. 3, 12.
2013
Neymotin, S., Hilscher MM., Moulin TC., Skolnick Y., Lazarewicz MT., & Lytton WW. (2013).  Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model. PLoS One. 8, e76285.
McDougal, R. A., Hines ML., & Lytton WW. (2013).  Reaction-Diffusion in the NEURON Simulator. Front Neuroinform. 7:28,
McDougal, R. A., Hines ML., & Lytton WW. (2013).  Water-tight membranes from neuronal morphology files. J Neurosci Methods. 220, 167–178.
2012
McDougal, R. A., Skolnick Y., Schaff JC., Lytton WW., & Hines ML. (2012).  Reaction-diffusion modeling in the NEURON simulator. BMC Neuroscience. 13, P119.
2010
Fenton, AA., Lytton WW., Barry JM., Lenck-Santini PP., Zinyuk LE., Kubík S., et al. (2010).  Attention-like modulation of hippocampus place cell discharge. J Neurosci. 30, 4613-4625.
2008
Günay, C., Smolinski TG., Lytton WW., Morse TM., Gleeson P., Crook S., et al. (2008).  Computational Intelligence in Electrophysiology. Studies in Computational Intelligence. 122, 325-359.
Neymotin, S., Uhlrich DJ., Manning KA., & Lytton WW. (2008).  Data mining of time-domain features from neural extracellular field data. Studies in Computational Intelligence. 151, 119-140.
2006
Migliore, M., Cannia C., Lytton WW., & Hines ML. (2006).  Parallel Network Simulations with NEURON. J. Computational Neuroscience. 6, 119-129.
2005
Uhlrich, DJ., Manning KA., Laughlin ML., & Lytton WW. (2005).  Photic-induced sensitization: acquisition of an augmenting spike-wave response in the adult rat through repeated strobe exposure. Journal of Neurophysiology. 94, 3925-3937.