NetPyNE, a tool for data-driven multiscale modeling of brain circuits. eLife. 8, e44494.(2019).
Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. Front. Neuroinform.. 12,(2018).
Embedded ensemble encoding hypothesis: The role of the ``Prepared'' cell. J. Neurosci. Res..(2018).
Geppetto: a reusable modular open platform for exploring neuroscience data and models. Phil. Trans. R. Soc. B. 373, 20170380.(2018).
Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits. bioRxiv.(2018).
Modeling pathogenesis and treatment response in childhood absence epilepsy. Epilepsia. 59, 135–145.(2018).
Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits. bioRxiv. 229484.(2018).
Optimization by Adaptive Stochastic Descent. PLOS ONE. 13, 1-16.(2018).
Using NEURON for reaction-diffusion modeling of extracellular dynamics. Frontiers in Neuroinformatics.(2018).
Computer modeling for pharmacological treatments for dystonia. Drug Discov Today: Dis Model. In Press.(2017).
Computer modeling of epilepsy: opportunities for drug discovery. Drug Discov Today: Dis Model. In press.(2017).
Computer modeling of ischemic stroke. Drug Discov Today: Dis Model. 30, In press.(2017).
Computers, causality and cure in epilepsy. Brain. 140, 516-519.(2017).
Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development. 61, 6–1.(2017).
Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons. J Simulation. 11, 267.(2017).
Measurement of peripheral vision reaction time identifies white matter disruption in patients with mild traumatic brain injury. J Neurotrauma.(2017).
Multiscale modeling in the clinic: diseases of the brain and nervous system. Brain Inform. 4, 219-230.(2017).
Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons. ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.(2017).
Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol. 117, 148-162.(2017).
Parallel Stochastic discrete event simulation of calcium dynamics in neuron.. IEEE/ACM transactions on computational biology and bioinformatics.(2017).
Tracking recurrence of correlation structure in neuronal recordings. J Neurosci Methods. 275, 1-9.(2017).
Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neurosci. 316, 344-366.(2016).
Global dynamics of selective attention and its lapses in primary auditory cortex. Nat Neurosci. In press.(2016).
Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex. Front Pharmacol. 7, 157.(2016).