Lab Publications
]
(1996). Muscarinic receptor mediated responses in thalamic local interneurons.
snabs. 22, 574.8.
(2019). NetPyNE, a tool for data-driven multiscale modeling of brain circuits.
eLife. 8, e44494.
(2014). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
BMC Neuroscience. 15, P107.
(2006). Neural query system: data-mining from within the NEURON simulator.
Neuroinformatics. 4, 163-176.
(2015). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.
Neural Comput. 27, 898–924.
(2018). Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits.
bioRxiv. 229484.
(2018). Optimization by Adaptive Stochastic Descent.
PLOS ONE. 13, 1-16.
(2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
J Neurophysiol. 117, 148-162.
(1996). Optimizing synaptic conductance calculation for network simulations.
ncomp. 8, 501-510.
(1995). Oscillations in Thalamic Interneurons.
snabs. 21, 12.5.
(2006). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2019). Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron.
IEEE/ACM Trans. Comput. Biol. Bioinform.. 16, 1007–1019.
(2017). Parallel Stochastic discrete event simulation of calcium dynamics in neuron..
IEEE/ACM transactions on computational biology and bioinformatics.
(2004). Paroxysm potentiation: synaptic potentiation enhances repetitive epileptiform discharge without enhancing evoked response.
Computation and neural systems meeting. Abstract,
(2008). Perisaccadic parietal and occipital gamma power in light and in complete darkness.
Perception. 37, 419-432.
(2005). Photic-induced sensitization: acquisition of an augmenting spike-wave response in the adult rat through repeated strobe exposure.
Journal of Neurophysiology. 94, 3925-3937.
(1999). Potentiation of Ca influx through NMDA channels by action potentials: a computer model.
Neuroreport. 10, 3711-3716.
(1999). Properties of a Hyperpolarization-Activated Cation Current in Interneurons in the Rat Lateral Geniculate Nucleus.
Neuroscience. 92, 445-457.
(2013). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2012). Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(1992). Realistic single-neuron modeling.
Seminars in Neuroscience. 4, 15-25.
(1997). Receptive field changes following stroke-like cortical ablation: a role for activation dynamics.
jnphys. 78, 3438-3443.
(1997). Regulation of the NMDA component of EPSPs by different components of postsynaptic GABAergic inhibition: A computer simulation analysis in piriform cortex.
jnphys. 78, 2546-2559.
(2013). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex.
Neural Comput. 25, 3263–3293.
(2012). Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex.
PLoS One. 7, e47251.
(2016). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2016). Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm.
Front Neurosci. 10, 28.
(2006). Rule-based firing for network simulations.
Neurocomputing. 69, 1160-1164.
(2005). A rule-based firing model for neural networks.
Int. J. for Bioelectromagnetism. 7, 47-50.
(2016). Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON.
Neural Comput. 28, 2063-2090.
(1991). Simulations of a phase comparing neuron of the electric fish Eigenmannia.
169, 117-125.
(1991). Simulations of cortical pyramidal neurons synchronized by inhibitory interneurons.
66, 1059-1079.
(1991). Simulations of synaptic potentials using realistic models of hippocampal pyramidal neurons.
163, 18.
(2010). Spectral method and high-order finite differences for the nonlinear cable equation.
Neural Comput. 22, 2113-2136.
(2008). Standardized assessment of extracellular single unit isolation quality.
socns. 690, 12.
(2011). Synaptic information transfer in computer models of neocortical columns.
J Comput Neurosci. 30, 69-84.
(2013). Synaptic scaling balances learning in a spiking model of neocortex.
Springer LNCS. 7824, 20–29.
(2014). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience Abstracts. 44,
(2007). Tonic-clonic transitions in computer simulation.
J Clin Neurophys. 24, 175-181.
(2012). Top-Down Feedback in an HMAX-Like Cortical Model of Object Perception Based on Hierarchical Bayesian Networks and Belief Propagation.
PLoS One. 7, e48216.
(2014). Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm.
Pattern Recognit Lett. 36, 204–212.
(2014). Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models.
Journal of Computational Surgery. 3, 12.
(2017). Tracking recurrence of correlation structure in neuronal recordings.
J Neurosci Methods. 275, 1-9.
(2008). Unmasking the CA1 ensemble place code by exposures to small and large environments: more place cells and multiple, irregularly arranged, and expanded place fields in the larger space.
jnsci. 28, 11250-11262.
(1999). Unmasking unmasked: Neural dynamics following stroke.
Progress in Brain Research. 121, 203-218.
(2018). Using NEURON for reaction-diffusion modeling of extracellular dynamics.
Frontiers in Neuroinformatics.
(2008). The virtual slice setup.
J Neurosci Methods. 171, 309-315.
(2013). Water-tight membranes from neuronal morphology files.
J Neurosci Methods. 220, 167–178.