Lab Publications
]
(2013). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2016). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2013). Water-tight membranes from neuronal morphology files.
J Neurosci Methods. 220, 167–178.
(2012). Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(2006). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2018). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Front. Neuroinform.. 12,
(1999). Potentiation of Ca influx through NMDA channels by action potentials: a computer model.
Neuroreport. 10, 3711-3716.
(2017). Computer modeling of ischemic stroke.
Drug Discov Today: Dis Model. 30, In press.
(2018). Using NEURON for reaction-diffusion modeling of extracellular dynamics.
Frontiers in Neuroinformatics.
(2011). Synaptic information transfer in computer models of neocortical columns.
J Comput Neurosci. 30, 69-84.
(2017). Tracking recurrence of correlation structure in neuronal recordings.
J Neurosci Methods. 275, 1-9.
(2013). Dynamical microstates in primary auditory cortex.
Society for Neuroscience Abstracts. 43,
(2011). Emergence of physiological oscillation frequencies in a computer model of neocortex.
Front Comput Neurosci. 5, 19.
(2013). Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model.
PLoS One. 8, e76285.
(2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
J Neurophysiol. 117, 148-162.
(2008). Standardized assessment of extracellular single unit isolation quality.
socns. 690, 12.
(2011). Measuring the quality of neuronal identification in ensemble recordings.
jnsci. 31, 16398–16409.
(2010). Interictal EEG Discoordination in a Rat Seizure Model.
J Clin Neurophysiol. 27, 438–444.
(2011). Ketamine disrupts theta modulation of gamma in a computer model of hippocampus.
J Neurosci. 31, 11733-11743.
(2016). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.
Neurosci. 316, 344-366.
(2017). Computer modeling for pharmacological treatments for dystonia.
Drug Discov Today: Dis Model. In Press.
(2015). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.
Neural Comput. 27, 898–924.
(2013). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex.
Neural Comput. 25, 3263–3293.
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
BMC Neuroscience. 15, P108.
(2008). Data mining of time-domain features from neural extracellular field data.
Studies in Computational Intelligence. 151, 119-140.
(2016). Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex.
Front Pharmacol. 7, 157.
(2004). Paroxysm potentiation: synaptic potentiation enhances repetitive epileptiform discharge without enhancing evoked response.
Computation and neural systems meeting. Abstract,
(2012). Input-to-output transformation in a model of the rat hippocampal CA1 network.
Front Comput Neurosci. 6, 57.
(2010). Spectral method and high-order finite differences for the nonlinear cable equation.
Neural Comput. 22, 2113-2136.
(2008). Local axon collaterals of area ca1 support spread of epileptiform discharges within CA1, but propagation is unidirectional.
Hippocampus. 18, 1021-1033.
(2019). Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron.
IEEE/ACM Trans. Comput. Biol. Bioinform.. 16, 1007–1019.
(2017). Parallel Stochastic discrete event simulation of calcium dynamics in neuron..
IEEE/ACM transactions on computational biology and bioinformatics.
(2013). Synaptic scaling balances learning in a spiking model of neocortex.
Springer LNCS. 7824, 20–29.
(2014). Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease.
Front Comput Neurosci. 8, 39.
(2012). Dynamically repairing and replacing neural networks: using hybrid computational and biological tools.
{IEEE} Pulse. 3, 57-59.
(2015). Impaired dendritic inhibition leads to epileptic activity in a computer model of CA3.
Hippocampus. in press.
(2015). Computer modeling of ischemic stroke.
Scholarpedia. 10, 32015; revision \#148671; Accessed Oct 12, 2015.
(1997). Receptive field changes following stroke-like cortical ablation: a role for activation dynamics.
jnphys. 78, 3438-3443.
(2013). Cortical plasticity induced by spike-triggered microstimulation in primate somatosensory cortex.
PLoS One. 8, e57453.
(2014). Modeling molecular pathways of neuronal ischemia.
Prog Mol Biol Transl Sci. 123, 249–275.
(1998). Computer model of antiepileptic effects mediated by alterations in \gabaa\-mediated inhibition.
Neuroreport. 9, 691-696.
(2005). Photic-induced sensitization: acquisition of an augmenting spike-wave response in the adult rat through repeated strobe exposure.
Journal of Neurophysiology. 94, 3925-3937.
(1991). Simulations of synaptic potentials using realistic models of hippocampal pyramidal neurons.
163, 18.
(1999). Burst Firing in Identified Interneurons of the Rat Lateral Geniculate Nucleus.
Neuroscience. 91, 1445-1460.
(1999). Properties of a Hyperpolarization-Activated Cation Current in Interneurons in the Rat Lateral Geniculate Nucleus.
Neuroscience. 92, 445-457.
(1995). Oscillations in Thalamic Interneurons.
snabs. 21, 12.5.
(1999). An intrinsic oscillation in interneurons of the rat lateral geniculate nucleus.
jnphys. 81, 702-711.
(1996). Muscarinic receptor mediated responses in thalamic local interneurons.
snabs. 22, 574.8.