Lab Publications
Neuron time warp.
Simulation Conference (WSC), 2014 Winter. 3447–3458.
(2014). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.
Neural Comput. 27, 898–924.
(2015). Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex.
Society for Neuroscience 2015 (SFN '15).
(2015).
(2018). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model.
Society for Neuroscience 2015 (SFN '15).
(2015). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2011). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models.
Society for Neuroscience 2014 (SFN '14).
(2014). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
J Neurophysiol. 117, 148-162.
(2017). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings.
Society for Neuroscience.
(2015). Optimizing synaptic conductance calculation for network simulations.
ncomp. 8, 501-510.
(1996). Oscillations in Thalamic Interneurons.
snabs. 21, 12.5.
(1995). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2006). Parallel reaction-diffusion simulation in NEURON.
Society for Neuroscience 2015 (SFN '15).
(2015). Parallel Stochastic discrete event simulation of calcium dynamics in neuron..
IEEE/ACM transactions on computational biology and bioinformatics.
(2017). Parallel stochastic simulation of neuronal reaction-diffusion equations.
Society for Neuroscience 2013 (SFN '13).
(2013). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2017). Parallelizing large networks using NEURON-Python.
BMC Neuroscience.
(2015). Paroxysm potentiation: synaptic potentiation enhances repetitive epileptiform discharge without enhancing evoked response.
Computation and neural systems meeting. Abstract,
(2004).
(1999). Perisaccadic parietal and occipital gamma power in light and in complete darkness.
Perception. 37, 419-432.
(2008). Photic-induced sensitization: acquisition of an augmenting spike-wave response in the adult rat through repeated strobe exposure.
Journal of Neurophysiology. 94, 3925-3937.
(2005). Potentiation of Ca influx through NMDA channels by action potentials: a computer model.
Neuroreport. 10, 3711-3716.
(1999). Properties of a Hyperpolarization-Activated Cation Current in Interneurons in the Rat Lateral Geniculate Nucleus.
Neuroscience. 92, 445-457.
(1999). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2013). Reaction-diffusion modeling in the NEURON simulator.
Computational Neuroscience.
(2012). Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(2012). Realistic single-neuron modeling.
Seminars in Neuroscience. 4, 15-25.
(1992). Receptive field changes following stroke-like cortical ablation: a role for activation dynamics.
jnphys. 78, 3438-3443.
(1997). Receptive field formation and erasure in somatosensory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Computational Neuroscience Meeting (CNS 18').
(2018). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Society for Neuroscience 2018 (SFN '18).
(2018). Recurrence of correlation structure in hippocampal neuronal ensembles during spatial behavior.
Society for Neuroscience 2010 (SFN '10).
(2010). Regulation of the NMDA component of EPSPs by different components of postsynaptic GABAergic inhibition: A computer simulation analysis in piriform cortex.
jnphys. 78, 2546-2559.
(1997). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensory and motor cortex.
Society for Neuroscience 2012 (SFN '12).
(2012). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex.
Neural Comput. 25, 3263–3293.
(2013). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation.
Neural Control of Movement.
(2012). Reinforcement learning of 2-joint virtual arm reaching in motor cortex simulation.
Computational Neuroscience Meeting (CNS '12).
(2012). Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex.
PLoS One. 7, e47251.
(2012). Repairing Lesions via Kernel Adaptive Inverse Control in a Biomimetic Model of Sensorimotor Cortex.
Neural Engineering (NER), 2015 7th International IEEE/EMBS Conference. 1-4.
(2015). Repairing lesions via microstimulation in a spiking network model driving a virtual arm..
Society for Neuroscience.
(2014). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2016). Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm.
Front Neurosci. 10, 28.
(2016). Restoring physiological oscillations using neuroprosthetic spike-timing-dependent plasticity in computer model of neocortex.
Society for Neuroscience.
(2011). Rule-based firing for network simulations.
Neurocomputing. 69, 1160-1164.
(2006). A rule-based firing model for neural networks.
Int. J. for Bioelectromagnetism. 7, 47-50.
(2005). Schizophrenia genome-wide association studied with computer simulation: gamma oscillations and information flow in CA3.
Society for Neuroscience 2016 (SFN '16).
(2016). Simulating the spread of activation in neocortical circuits. Computational Neuroscience.
Computational Neuroscience.
(2011). Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON.
Neural Comput. 28, 2063-2090.
(2016). Simulation of avalanches in mouse primary motor cortex (M1).
Computational Neuroscience Meeting (CNS 18').
(2018). Simulation of large networks: technique and progress.
(Soltesz, I., & Staley K., Ed.).Computational Neuroscience in Epilepsy. 3-17.
(2008).
(1991).
(1991). Simulations of synaptic potentials using realistic models of hippocampal pyramidal neurons.
163, 18.
(1991). Site-directed mRNA editing of sodium channels has potential to alter neuronal firing and network dynamics: Computer models.
Society for Neuroscience 2017 (SFN '17).
(2017). Spectral method and high-order finite differences for the nonlinear cable equation.
Neural Comput. 22, 2113-2136.
(2010).
(2018). Spike-timing-dependent plasticity and subcortical waves enhance alpha oscillations in a computer model of neocortex.
Neuroinformatics.
(2011). Spiking network modeling of neuronal dynamics in individual rats.
BMC Neuroscience.
(2015). Standardized assessment of extracellular single unit isolation quality.
Society for Neuroscience.
(2008).
(2008). Stochastic diffusion simulation in NEURON.
Society for Neuroscience 2014 (SFN '14).
(2014). Synaptic information transfer in computer models of neocortical columns.
J Comput Neurosci. 30, 69-84.
(2011). Ten "not so simple" rules for credible practice of modeling & simulation in healthcare.
Frontiers in Medical Devices Meeting.
(2015). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience 2014 (SFN '14).
(2014). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system.
Society for Neuroscience Abstracts. 44,
(2014). Tonic-clonic transitions in computer simulation.
J Clin Neurophys. 24, 175-181.
(2007). Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm.
Pattern Recognit Lett. 36, 204–212.
(2014). Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models.
Journal of Computational Surgery. 3, 12.
(2014). Tracking recurrence of correlation structure in neuronal recordings.
J Neurosci Methods. 275, 1-9.
(2017). Training oscillatory dynamics with spike-timing-dependent plasticity in a computer model of neocortex.
2011 IEEE Signal Processing in Medicine and Biology Symposium (SPMB). 1–6.
(2011). Transformation of inputs in a model of the rat hippocampal CA1 network.
Society for Neuroscience 2010 (SFN '10).
(2010). Transformation of inputs in a model of the rat hippocampal CA1 network.
Computational Neuroscience Meeting (CNS 10').
(2010). Unmasking the CA1 ensemble place code by exposures to small and large environments: more place cells and multiple, irregularly arranged, and expanded place fields in the larger space.
jnsci. 28, 11250-11262.
(2008). Unmasking unmasked: Neural dynamics following stroke.
Progress in Brain Research. 121, 203-218.
(1999).