Lab Publications

Found 30 results
Author Title Type [ Year(Asc)]
Filters: First Letter Of Last Name is D  [Clear All Filters]
2019
Dura-Bernal, S., Suter B. A., Gleeson P., Cantarelli M., Quintana A., Rodriguez F., et al. (2019).  NetPyNE, a tool for data-driven multiscale modeling of brain circuits. eLife. 8, e44494.
2018
Mulugeta, L., Drach A., Erdemir A., Hunt C. A., Horner M., Ku J. P., et al. (2018).  Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. Front. Neuroinform.. 12,
Cantarelli, M., Marin B., Quintana A., Earnshaw M., Gleeson P., Dura-Bernal S., et al. (2018).  Geppetto: a reusable modular open platform for exploring neuroscience data and models. Phil. Trans. R. Soc. B. 373, 20170380.
Dura-Bernal, S., Neymotin S., Suter BA., Shepherd GMG., & Lytton WW. (2018).  Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits. bioRxiv.
Gleeson, P., Cantarelli M., Marin B., Quintana A., Earnshaw M., Piasini E., et al. (2018).  Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits. bioRxiv. 229484.
Kerr, C. C., Dura-Bernal S., Smolinski T. G., Chadderdon G. L., & Wilson D. P. (2018).  Optimization by Adaptive Stochastic Descent. PLOS ONE. 13, 1-16.
2017
Neymotin, S., Dura-Bernal S., Moreno H., & Lytton WW. (2017).  Computer modeling for pharmacological treatments for dystonia. Drug Discov Today: Dis Model. In Press.
Dura-Bernal, S., Neymotin S., Kerr CC., Sivagnanam S., Majumdar A., Francis JT., et al. (2017).  Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development. 61, 6–1.
Womack, KB., Paliotta C., Strain JF., Ho JS., Skolnick Y., Lytton WW., et al. (2017).  Measurement of peripheral vision reaction time identifies white matter disruption in patients with mild traumatic brain injury. J Neurotrauma.
Neymotin, S., Suter BA., Dura-Bernal S., Shepherd GM., Migliore M., & Lytton WW. (2017).  Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol. 117, 148-162.
2016
Neymotin, S., Dura-Bernal S., Lakatos P., Sanger TD., & Lytton WW. (2016).  Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex. Front Pharmacol. 7, 157.
Dura-Bernal, S., Li K., Neymotin S., Francis JT., Principe JC., & Lytton WW. (2016).  Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm. Front Neurosci. 10, 28.
Lytton, WW., Seidenstein AH., Dura-Bernal S., McDougal R. A., Schürmann F., & Hines ML. (2016).  Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON. Neural Comput. 28, 2063-2090.
2015
Dura-Bernal, S., Zhou X., Neymotin S., Przekwas A., Francis J. T., & Lytton WW. (2015).  Cortical spiking network interfaced with virtual musculoskeletal arm and robotic arm. Frontiers in Neurorobotics. 9,
2014
Kerr, C. C., O'Shea D. J., Goo W., Dura-Bernal S., Diester I., Kalanithi P., et al. (2014).  Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment. Neural Control of Movement (NCM) meeting.
Kerr, C. C., O'Shea D. J., Goo W., Dura-Bernal S., Diester I., Kalanithi P., et al. (2014).  Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment. Neural Control of Movement (NCM) meeting.
Kerr, C. C., O'Shea D. J., Goo W., Dura-Bernal S., Diester I., Kalanithi P., et al. (2014).  Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment. Neural Control of Movement (NCM) meeting.
Dura-Bernal, S., Li K., Brockmeier A., Kerr C., Neymotin S., Principe J., et al. (2014).  Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex. BMC Neuroscience. 15, P106.
Kerr, CC., O'Shea DJ., Goo W., Dura-Bernal S., Francis JT., Diester I., et al. (2014).  Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex. BMC Neuroscience. 15, P107.
Kerr, CC., O'Shea DJ., Goo W., Dura-Bernal S., Francis JT., Diester I., et al. (2014).  Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex. BMC Neuroscience. 15, P107.
Kerr, CC., O'Shea DJ., Goo W., Dura-Bernal S., Francis JT., Diester I., et al. (2014).  Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex. BMC Neuroscience. 15, P107.
Dura-Bernal, S., Chadderdon GL., Neymotin S., Francis JT., & Lytton WW. (2014).  Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm. Pattern Recognit Lett. 36, 204–212.
Lee, GJ., Matsunaga A., Dura-Bernal S., Zhang W., Lytton WW., Francis JT., et al. (2014).  Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models. Journal of Computational Surgery. 3, 12.
2013
Dura-Bernal, S., Garreau G., Georgiou J., Andreou A. G., Denham S. L., & Wennekers T. (2013).  Multimodal integration of micro-Doppler sonar and auditory signals for behavior classification with convolutional networks. International Journal of Neural Systems. 23, 1350021.
Dura-Bernal, S., Garreau G., Georgiou J., Andreou A. G., Denham S. L., & Wennekers T. (2013).  Multimodal integration of micro-Doppler sonar and auditory signals for behavior classification with convolutional networks. International Journal of Neural Systems. 23, 1350021.
2012
Dura-Bernal, S., Wennekers T., & Denham S. L. (2012).  Top-Down Feedback in an HMAX-Like Cortical Model of Object Perception Based on Hierarchical Bayesian Networks and Belief Propagation. PLoS One. 7, e48216.
Dura-Bernal, S., Wennekers T., & Denham S. L. (2012).  Top-Down Feedback in an HMAX-Like Cortical Model of Object Perception Based on Hierarchical Bayesian Networks and Belief Propagation. PLoS One. 7, e48216.
1997
Lytton, WW., Contreras D., Destexhe A., & Steriade M. (1997).  Dynamic interactions determine partial thalamic quiescence in a computer network model of spike-and-wave seizures. jnphys. 77, 1679-1696.
Deyo, S., & Lytton WW. (1997).  Inhibition Can Disrupt Hypersynchrony In Model Neuronal Networks. Progress in neuro-psychopharmacology & biological psychiatry.
1996
Lytton, WW., Destexhe A., & Sejnowski TJ. (1996).  Control of slow oscillations in the thalamocortical neuron: A computer model. Neuroscience. 70, 673-684.