Lab Publications
Mosaic multiscale computer modeling of ischemic stroke.
Society for Neuroscience 2016 (SFN '16).
(2016). Motor cortex microcircuit simulation based on brain activity mapping.
Neural Comput. 26, 1239–1262.
(2014). Motor cortex neurons: from experiment to model via evolutionary algorithms.
Computational Neuroscience.
(2015). Multimodal integration of micro-Doppler sonar and auditory signals for behavior classification with convolutional networks.
International Journal of Neural Systems. 23, 1350021.
(2013).
(2015). Multiscale computer modeling of penumbral zones in brain ischemia.
Society for Neuroscience 2017 (SFN '17).
(2017). Multiscale modeling for clinical translation in neuropsychiatric disease.
J Comput Surgery. 1, 7.
(2014). Multiscale modeling in the clinic: diseases of the brain and nervous system.
Brain Inform. 4, 219-230.
(2017). Multiscale modeling of brain disease.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale modeling of cortical information flow in Parkinson's disease.
Computational Neuroscience Meeting (CNS '13).
(2013). Multiscale modeling of multitarget pharmacotherapy for dystonia.
Computational Neuroscience Meeting (CNS 16').
(2016). Multiscale simulation of spreading depolarization in ischemic stroke.
Society for Neuroscience 2018 (SFN '18).
(2018). Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex.
Front Pharmacol. 7, 157.
(2016). Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.
ACM Transactions on Modeling and Computer Simulation (TOMACS). 27, 7.
(2017). Muscarinic receptor mediated responses in thalamic local interneurons.
snabs. 22, 574.8.
(1996). Neocortical simulation for epilepsy surgery guidance: localization and intervention.
(Bass, B., & Garbey M., Ed.).Computational Surgery and Dual Training. 339–349.
(2014). NetPyNE: A GUI-based tool to build, simulate and analyze large-scale, data-driven network models in parallel NEURON.
Society for Neuroscience 2018 (SFN '18).
(2018). NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models.
Computational Neuroscience Meeting (CNS 18').
(2018). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience Meeting (CNS 16').
(2016). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience.
(2016). NetPyNE, a tool for data-driven multiscale modeling of brain circuits.
eLife. 8, e44494.
(2019). Network-level coincidence detection in a computer simulation of primary motor cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
Computational Neuroscience Meeting (CNS 14').
(2014). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex.
BMC Neuroscience. 15, P107.
(2014). Neural discoordination of hippocampus and prefrontal cortex spike trains in a phencyclidine schizophrenia-related animal model.
Society for Neuroscience 2009 (SFN '09).
(2009). Neural query system: data-mining from within the NEURON simulator.
Neuroinformatics. 4, 163-176.
(2006). Neuron time warp.
Simulation Conference (WSC), 2014 Winter. 3447–3458.
(2014). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.
Neural Comput. 27, 898–924.
(2015). Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex.
Society for Neuroscience 2015 (SFN '15).
(2015).
(2018). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model.
Society for Neuroscience 2015 (SFN '15).
(2015). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2011). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models.
Society for Neuroscience 2014 (SFN '14).
(2014). Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits.
bioRxiv. 229484.
(2018). Optimization by Adaptive Stochastic Descent.
PLOS ONE. 13, 1-16.
(2018). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
J Neurophysiol. 117, 148-162.
(2017). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings.
Society for Neuroscience.
(2015). Optimizing synaptic conductance calculation for network simulations.
ncomp. 8, 501-510.
(1996). Oscillations in Thalamic Interneurons.
snabs. 21, 12.5.
(1995). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2006). Parallel reaction-diffusion simulation in NEURON.
Society for Neuroscience 2015 (SFN '15).
(2015). Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron.
IEEE/ACM Trans. Comput. Biol. Bioinform.. 16, 1007–1019.
(2019). Parallel Stochastic discrete event simulation of calcium dynamics in neuron..
IEEE/ACM transactions on computational biology and bioinformatics.
(2017). Parallel stochastic simulation of neuronal reaction-diffusion equations.
Society for Neuroscience 2013 (SFN '13).
(2013). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2017). Parallelizing large networks using NEURON-Python.
BMC Neuroscience.
(2015). Paroxysm potentiation: synaptic potentiation enhances repetitive epileptiform discharge without enhancing evoked response.
Computation and neural systems meeting. Abstract,
(2004).
(1999). Perisaccadic parietal and occipital gamma power in light and in complete darkness.
Perception. 37, 419-432.
(2008). Photic-induced sensitization: acquisition of an augmenting spike-wave response in the adult rat through repeated strobe exposure.
Journal of Neurophysiology. 94, 3925-3937.
(2005). Potentiation of Ca influx through NMDA channels by action potentials: a computer model.
Neuroreport. 10, 3711-3716.
(1999). Properties of a Hyperpolarization-Activated Cation Current in Interneurons in the Rat Lateral Geniculate Nucleus.
Neuroscience. 92, 445-457.
(1999). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2013). Reaction-diffusion modeling in the NEURON simulator.
Computational Neuroscience.
(2012). Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(2012). Realistic single-neuron modeling.
Seminars in Neuroscience. 4, 15-25.
(1992). Receptive field changes following stroke-like cortical ablation: a role for activation dynamics.
jnphys. 78, 3438-3443.
(1997). Receptive field formation and erasure in somatosensory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Computational Neuroscience Meeting (CNS 18').
(2018). Recruitment of neurons into neural ensembles based on dendritic plateau potentials.
Society for Neuroscience 2018 (SFN '18).
(2018). Recurrence of correlation structure in hippocampal neuronal ensembles during spatial behavior.
Society for Neuroscience 2010 (SFN '10).
(2010). Regulation of the NMDA component of EPSPs by different components of postsynaptic GABAergic inhibition: A computer simulation analysis in piriform cortex.
jnphys. 78, 2546-2559.
(1997). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensory and motor cortex.
Society for Neuroscience 2012 (SFN '12).
(2012). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex.
Neural Comput. 25, 3263–3293.
(2013). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation.
Neural Control of Movement.
(2012). Reinforcement learning of 2-joint virtual arm reaching in motor cortex simulation.
Computational Neuroscience Meeting (CNS '12).
(2012). Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex.
PLoS One. 7, e47251.
(2012). Repairing Lesions via Kernel Adaptive Inverse Control in a Biomimetic Model of Sensorimotor Cortex.
Neural Engineering (NER), 2015 7th International IEEE/EMBS Conference. 1-4.
(2015). Repairing lesions via microstimulation in a spiking network model driving a virtual arm..
Society for Neuroscience.
(2014). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2016). Response to simultaneous long-range inputs and oscillatory inputs in a multiscale model of M1 microcircuits.
Society for Neuroscience 2019 (SFN '19).
(2019). Restoring behavior via inverse neurocontroller in a lesioned cortical spiking model driving a virtual arm.
Front Neurosci. 10, 28.
(2016). Restoring physiological oscillations using neuroprosthetic spike-timing-dependent plasticity in computer model of neocortex.
Society for Neuroscience.
(2011). The role of feedback in a hierarchical model of object perception.
Proceedings of BICS 2010 - Brain Inspired Cognitive Systems 14-16 July 2010, Madrid, Spain..
(2010).