Genome-wide associations of schizophrenia studied with computer simulation. (Cutsuridis, V., Graham BP., Cobb S., & Vida I., Ed.).Hippocampal Microcircuits: A Computational Modeler's Resource Book. 2,(2018).
Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits. bioRxiv.(2018).
NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models. Computational Neuroscience Meeting (CNS 18').(2018).
Computer modeling for pharmacological treatments for dystonia. Drug Discov Today: Dis Model. In Press.(2017).
Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development. 61, 6–1.(2017).
Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol. 117, 148-162.(2017).
Tracking recurrence of correlation structure in neuronal recordings. J Neurosci Methods. 275, 1-9.(2017).
Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neurosci. 316, 344-366.(2016).
Effect of network size on computational capacity. Computational Neuroscience Meeting (CNS 16').(2016).
Global dynamics of selective attention and its lapses in primary auditory cortex. Nat Neurosci. In press.(2016).
Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex. Front Pharmacol. 7, 157.(2016).
Cortical spiking network interfaced with virtual musculoskeletal arm and robotic arm. Frontiers in Neurorobotics. 9,(2015).
A dynamic data-driven approach to closed-loop neuroprosthetics based on multiscale biomimetic brain models. IEEE Interanationl Conference on High Performance Computing 2015 Workshop: InfoSymbiotics/Dynamic Data Driven Applications Systems (DDDAS) for Smarter Systems, Bangalore, India.(2015).
Impaired dendritic inhibition leads to epileptic activity in a computer model of CA3. Hippocampus. in press.(2015).
Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control. 24th Annual Computational Neuroscience Meeting (CNS15).(2015).
Microconnectomics of primary motor cortex: a multiscale computer model. Multiscale Modeling. National Institutes of Health.(2015).
Motor cortex neurons: from experiment to model via evolutionary algorithms. Computational Neuroscience.(2015).
Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. Neural Comput. 27, 898–924.(2015).
Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings. Society for Neuroscience.(2015).
Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex. BMC Neuroscience. 15, P108.(2014).
Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity. Front Neural Circuits. 8, 16.(2014).
Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Front Comput Neurosci. 8, 39.(2014).
Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm.. Neural Control of Movement.(2014).
Integrating Systems Biology Markup Language (SBML) with NEURON. Computational Neuroscience.(2014).
Modeling molecular pathways of neuronal ischemia. Prog Mol Biol Transl Sci. 123, 249–275.(2014).
Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex. BMC Neuroscience. 15, P106.(2014).
Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput. 26, 1239–1262.(2014).
Multiscale modeling for clinical translation in neuropsychiatric disease. J Comput Surgery. 1, 7.(2014).
Neocortical simulation for epilepsy surgery guidance: localization and intervention. (Bass, B., & Garbey M., Ed.).Computational Surgery and Dual Training. 339–349.(2014).
Repairing lesions via microstimulation in a spiking network model driving a virtual arm.. Society for Neuroscience.(2014).
Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system. Society for Neuroscience Abstracts. 44,(2014).
Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm. Pattern Recognit Lett. 36, 204–212.(2014).
Cortical information flow in Parkinson's disease: a composite network/field model. Front Comput Neurosci. 7, 39.(2013).
Dynamical microstates in primary auditory cortex. Society for Neuroscience Abstracts. 43,(2013).
Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model. PLoS One. 8, e76285.(2013).
Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex. Neural Comput. 25, 3263–3293.(2013).
Synaptic scaling balances learning in a spiking model of neocortex. Springer LNCS. 7824, 20–29.(2013).
Virtual musculoskeletal arm and robotic arm driven by a biomimetic model of sensorimotor cortex with reinforcement learning. Signal Processing in Medicine and Biology Symposium (SPMB), 2013 IEEE. 1-5.(2013).
CPP alters hippocampal CA1 oscillations in rat: simulation and experiment. Computational Neuroscience.(2012).
Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex. International Conference on Cognititve and Neural Systems 16.(2012).
Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex. Society for Neuroscience.(2012).
Effects of basal ganglia on cortical computation: a hybrid network/neural field model. Society for Neuroscience.(2012).
Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE Trans Neural Syst Rehab Eng. 20, 153–60.(2012).
Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation. Neural Control of Movement.(2012).
Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex. PLoS One. 7, e47251.(2012).
Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci. 5, 19.(2011).
Interlaminar feedback connections dominate in macaque inferotemporal cortex: in vivo and in silico studies. Society for Neuroscience.(2011).
Interlaminar Granger causality and alpha oscillations in a model of macaque cortex. Computational Neuroscience.(2011).
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus. J Neurosci. 31, 11733-11743.(2011).
Measuring the quality of neuronal identification in ensemble recordings. jnsci. 31, 16398–16409.(2011).
Modulation of stimulus fields in a computer model of the thalamocortical system. Society for Neuroscience.(2011).
Restoring physiological oscillations using neuroprosthetic spike-timing-dependent plasticity in computer model of neocortex. Society for Neuroscience.(2011).
Simulating the spread of activation in neocortical circuits. Computational Neuroscience. Computational Neuroscience.(2011).
Spike-timing-dependent plasticity and subcortical waves enhance alpha oscillations in a computer model of neocortex. Neuroinformatics.(2011).
Synaptic information transfer in computer models of neocortical columns. J Comput Neurosci. 30, 69-84.(2011).
Training oscillatory dynamics with spike-timing-dependent plasticity in a computer model of neocortex. 2011 IEEE Signal Processing in Medicine and Biology Symposium (SPMB). 1–6.(2011).
Development of In Silico Brain for DARPA REPAIR project. DARPA Neural Engineering, Science, and Technology Meeting.(2010).
Emergent oscillations in neocortex: a simulation study. Dynamical Neuroscience XVIII: The Resting Brain: Not at Rest! Satellite meeting for Society for Neuroscience Meeting.(2010).
Interictal EEG Discoordination in a Rat Seizure Model. J Clin Neurophysiol. 27, 438–444.(2010).
Interictal EEG discoordination in a rat seizure model. Statistical Analysis of Neuronal Data.(2010).
Circuit changes augment disinhibited shock responses in computer models of neocortex. American Epilepsy Society Annual Meeting. 3, 284.(2008).
Circuit changes augment disinhibited shock responses in computer models of neocortex. American Epilepsy Society Annual Meeting.(2008).
Data mining of time-domain features from neural extracellular field data. Studies in Computational Intelligence. 151, 119-140.(2008).
Just-in-time connectivity for large spiking networks. ncomp. 20, 2745-2756.(2008).
Standardized assessment of extracellular single unit isolation quality. Society for Neuroscience.(2008).
Unmasking the CA1 ensemble place code by exposures to small and large environments: more place cells and multiple, irregularly arranged, and expanded place fields in the larger space. jnsci. 28, 11250-11262.(2008).
The virtual slice setup. J Neurosci Methods. 171, 309-315.(2008).
Virtual slice simulation of resonance in a layered cortical model. socns. 769, 25.(2008).
Virtual slice simulation of resonance in a layered cortical model. Society for Neuroscience.(2008).