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NetPyNE: a high-level interface to NEURON to facilitate the development, parallel simulation and analysis of data-driven multiscale network models. Computational Neuroscience Meeting (CNS 18').(2018).
Computer modeling for pharmacological treatments for dystonia. Drug Discov Today: Dis Model. In Press.(2017).
Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development. 61, 6–1.(2017).
Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol. 117, 148-162.(2017).
Tracking recurrence of correlation structure in neuronal recordings. J Neurosci Methods. 275, 1-9.(2017).
Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neurosci. 316, 344-366.(2016).
Computational capacity as a function of network size. Society for Neuroscience 2016 (SFN '16).(2016).
Effect of network size on computational capacity. Computational Neuroscience Meeting (CNS 16').(2016).
Global dynamics of selective attention and its lapses in primary auditory cortex. Nat Neurosci. In press.(2016).
Multitarget multiscale simulation for pharmacological treatment of dystonia in motor cortex. Front Pharmacol. 7, 157.(2016).
Cortical spiking network interfaced with virtual musculoskeletal arm and robotic arm. Frontiers in Neurorobotics. 9,(2015).
A dynamic data-driven approach to closed-loop neuroprosthetics based on multiscale biomimetic brain models. IEEE Interanationl Conference on High Performance Computing 2015 Workshop: InfoSymbiotics/Dynamic Data Driven Applications Systems (DDDAS) for Smarter Systems, Bangalore, India.(2015).
Impaired dendritic inhibition leads to epileptic activity in a computer model of CA3. Hippocampus. in press.(2015).
Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control. 24th Annual Computational Neuroscience Meeting (CNS15).(2015).
Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. Neural Comput. 27, 898–924.(2015).
Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex. BMC Neuroscience. 15, P108.(2014).
Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity. Front Neural Circuits. 8, 16.(2014).
Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Front Comput Neurosci. 8, 39.(2014).
Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm.. Neural Control of Movement.(2014).
Modeling molecular pathways of neuronal ischemia. Prog Mol Biol Transl Sci. 123, 249–275.(2014).
Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex. BMC Neuroscience. 15, P106.(2014).
Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput. 26, 1239–1262.(2014).
Multiscale modeling for clinical translation in neuropsychiatric disease. J Comput Surgery. 1, 7.(2014).
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Repairing lesions via microstimulation in a spiking network model driving a virtual arm.. Society for Neuroscience.(2014).
Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system. Society for Neuroscience Abstracts. 44,(2014).
Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm. Pattern Recognit Lett. 36, 204–212.(2014).
Calcium wave propagation varies with changes in endoplasmic reticulum parameters: A computer model. Society for Neuroscience 2013 (SFN '13).(2013).
Cortical information flow in Parkinson's disease: a composite network/field model. Front Comput Neurosci. 7, 39.(2013).
Dynamical microstates in primary auditory cortex. Society for Neuroscience Abstracts. 43,(2013).
Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model. PLoS One. 8, e76285.(2013).
Reinforcement learning of 2-joint virtual arm reaching in computer model of sensorimotor cortex. Neural Comput. 25, 3263–3293.(2013).
Synaptic scaling balances learning in a spiking model of neocortex. Springer LNCS. 7824, 20–29.(2013).
Virtual musculoskeletal arm and robotic arm driven by a biomimetic model of sensorimotor cortex with reinforcement learning. Signal Processing in Medicine and Biology Symposium (SPMB), 2013 IEEE. 1-5.(2013).
Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE Trans Neural Syst Rehab Eng. 20, 153–60.(2012).
Reinforcement Learning of Targeted Movement in a Spiking Neuronal Model of Motor Cortex. PLoS One. 7, e47251.(2012).
Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci. 5, 19.(2011).
Ketamine disrupts theta modulation of gamma in a computer model of hippocampus. J Neurosci. 31, 11733-11743.(2011).
Measuring the quality of neuronal identification in ensemble recordings. jnsci. 31, 16398–16409.(2011).
Synaptic information transfer in computer models of neocortical columns. J Comput Neurosci. 30, 69-84.(2011).
Training oscillatory dynamics with spike-timing-dependent plasticity in a computer model of neocortex. 2011 IEEE Signal Processing in Medicine and Biology Symposium (SPMB). 1–6.(2011).
Interictal EEG Discoordination in a Rat Seizure Model. J Clin Neurophysiol. 27, 438–444.(2010).
Circuit changes augment disinhibited shock responses in computer models of neocortex. American Epilepsy Society Annual Meeting. 3, 284.(2008).
Data mining of time-domain features from neural extracellular field data. Studies in Computational Intelligence. 151, 119-140.(2008).
Just-in-time connectivity for large spiking networks. ncomp. 20, 2745-2756.(2008).
Unmasking the CA1 ensemble place code by exposures to small and large environments: more place cells and multiple, irregularly arranged, and expanded place fields in the larger space. jnsci. 28, 11250-11262.(2008).
The virtual slice setup. J Neurosci Methods. 171, 309-315.(2008).
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