Lab Publications
]
(2010). Emergent oscillations in neocortex: a simulation study.
Dynamical Neuroscience XVIII: The Resting Brain: Not at Rest! Satellite meeting for Society for Neuroscience Meeting.
(2010). Altered information transfer in neuronal networks marks pathology.
Computational Neuroscience Meeting (CNS 10').
(2011). Ketamine disrupts theta modulation of gamma in a computer model of hippocampus.
J Neurosci. 31, 11733-11743.
(2015). Motor cortex neurons: from experiment to model via evolutionary algorithms.
Computational Neuroscience.
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex.
BMC Neuroscience. 15, P108.
(2009). Information transmission vs processing in computer models of neocortical columns.
Society for Neuroscience 2009 (SFN '09).
(2010). Interictal EEG Discoordination in a Rat Seizure Model.
J Clin Neurophysiol. 27, 438–444.
(2010). Interictal EEG discoordination in a rat seizure model.
Statistical Analysis of Neuronal Data.
(2008). Data mining of time-domain features from neural extracellular field data.
Studies in Computational Intelligence. 151, 119-140.
(2013). Dynamical microstates in primary auditory cortex.
Society for Neuroscience Abstracts. 43,
(2010). Recurrence of correlation structure in hippocampal neuronal ensembles during spatial behavior.
Society for Neuroscience 2010 (SFN '10).
(2016). Beta oscillations in neocortex: A multiscale modeling study.
Society for Neuroscience 2016 (SFN '16).
(2013). Ih Tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model.
PLoS One. 8, e76285.
(2018). Genome-wide associations of schizophrenia studied with computer simulation.
(Cutsuridis, V., Graham BP., Cobb S., & Vida I., Ed.).Hippocampal Microcircuits: A Computational Modeler's Resource Book. 2,
(2013). Computational Neuroscience of Neuronal Networks.
(Pfaff, D., Ed.).
(2019). Homeostasis and spreading depolarization in multiscale simulation of ischemic stroke..
Society for Neuroscience 2018 (SFN '19).
(2017). Computer modeling of ischemic stroke.
Drug Discov Today: Dis Model. 30, In press.
(2017). Modeling electrodiffusion with the NEURON reaction-diffusion module.
Society for Neuroscience 2017 (SFN '17).
(2018). Using NEURON for reaction-diffusion modeling of extracellular dynamics.
Frontiers in Neuroinformatics.
(2018). Extracellular reaction–diffusion in the NEURON simulator: modeling ischemic stroke.
Computational Neuroscience Meeting (CNS 18').
(2018). Multiscale simulation of spreading depolarization in ischemic stroke.
Society for Neuroscience 2018 (SFN '18).
(2019). Efficient in silico 3D intracellular neuron simulation.
Society for Neuroscience 2019 (SFN '19).
(1999). Potentiation of Ca influx through NMDA channels by action potentials: a computer model.
Neuroreport. 10, 3711-3716.
(2018). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.
Front. Neuroinform.. 12,
(2013). Network-level coincidence detection in a computer simulation of primary motor cortex.
Society for Neuroscience 2013 (SFN '13).
(2006). Parallel Network Simulations with NEURON.
J. Computational Neuroscience. 6, 119-129.
(2016). Expanding NEURON support for reaction-diffusion models.
Society for Neuroscience 2016 (SFN '16).
(2015). Hybrid 1d/3d reaction-diffusion in the neuron simulator.
Society for Neuroscience 2015 (SFN '15).
(2012). Calcium-electrical interactions: An example of reaction-diffusion in the neuron simulator.
Society for Neuroscience 2012 (SFN '12).
(2014). A method for multi-simulator reaction-diffusion with NEURON.
Computational Neuroscience.
(2017). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2013). Water-tight membranes from neuronal morphology files.
J Neurosci Methods. 220, 167–178.
(2014). Calcium 'impedance mismatch' – the role of geometry on diffusion dynamics.
Society for Neuroscience 2014 (SFN '14).
(2011). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2013). Reaction-Diffusion in the NEURON Simulator.
Front Neuroinform. 7:28,
(2018). Building, simulating, and visualizing reaction-diffusion models with NEURON's enhanced rxd module.
Society for Neuroscience 2018 (SFN '18).
(2016). Reproducibility in computational neuroscience models and simulations.
{IEEE} Trans Biomed Eng. 63, 2021-2035.
(2018). Building and visualizing reaction–diffusion simulations in NEURON.
Computational Neuroscience Meeting (CNS 18').
(2012). Reaction-diffusion modeling in the NEURON simulator.
Computational Neuroscience.
(2012). Reaction-diffusion modeling in the NEURON simulator.
BMC Neuroscience. 13, P119.
(2017). Computer modeling of epilepsy: opportunities for drug discovery.
Drug Discov Today: Dis Model. In press.
(2008). The virtual slice setup.
J Neurosci Methods. 171, 309-315.
(1989). Localization of a leech inhibitory synapse by photo-ablation of individual dendrites.
504, 43-48.
(2002). From Computer to Brain.
(2008). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting.
(2014). Multiscale modeling for clinical translation in neuropsychiatric disease.
J Comput Surgery. 1, 7.
(1996). Optimizing synaptic conductance calculation for network simulations.
ncomp. 8, 501-510.
(2007). Tonic-clonic transitions in computer simulation.
J Clin Neurophys. 24, 175-181.
(1998). Computer Models of Hippocampal Circuit Changes of the Kindling Model of Epilepsy.
Artificial Intelligence in Medicine. 13, 81-98.
(2008). Computer modelling of epilepsy.
Nat Rev Neurosci. 9, 626-637.
(2010). Computer network model predicts dependence of neocortical laminar activation patterns on form of stimulation.
Society for Neuroscience 2010 (SFN '10).
(2013). Computational Neuroscience of Neurons and Synapses.
(Pfaff, D., Ed.).
(2008). Simulation of large networks: technique and progress.
(Soltesz, I., & Staley K., Ed.).Computational Neuroscience in Epilepsy. 3-17.
(1999). Unmasking unmasked: Neural dynamics following stroke.
Progress in Brain Research. 121, 203-218.
(1989). Direct dyslexia: Preserved oral reading of real words in Wernicke's aphasia.
Brain. 112, 583-594.
(2004). Hybrid neural networks - combining abstract and realistic neural units.
IEEE Engineering in Medicine and Biology Society Proceedings. 6, 3996-3998.
(2017). Multiscale modeling in the clinic: diseases of the brain and nervous system.
Brain Inform. 4, 219-230.
(2005). A rule-based firing model for neural networks.
Int. J. for Bioelectromagnetism. 7, 47-50.
(2018). Multiscale modeling of brain disease.
Society for Neuroscience 2018 (SFN '18).
(1996). Computer network model of mossy fiber sprouting in dentate gyrus.
Epilepsia – AES Proceedings. 37 S. 5, 117.
(2008). Just-in-time connectivity for large spiking networks.
ncomp. 20, 2745-2756.
(1992). Computer model of ethosuximide's effect on a thalamic neuron.
32, 131-139.
(2017). Site-directed mRNA editing of sodium channels has potential to alter neuronal firing and network dynamics: Computer models.
Society for Neuroscience 2017 (SFN '17).
(1999). Modeling thalamocortical oscillations.
(Ulinski, P., Jones EG., & Peters A., Ed.).Cerebral Cortex. 13, 479-509.
(2012). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation.
Neural Control of Movement.
(1999). Computer models of stroke recovery: Implications for neurorehabilitation.
The Neuroscientist. 5, 100-111.
(2008). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting. 3, 284.
(2005). Independent variable timestep integration of individual neurons for network simulations.
17, 903-921.
(2006). Rule-based firing for network simulations.
Neurocomputing. 69, 1160-1164.
(2008). Broadening of activity with flow across neural structures.
Perception. 37, 401-407.
(1992). Realistic single-neuron modeling.
Seminars in Neuroscience. 4, 15-25.
(1991). Simulations of a phase comparing neuron of the electric fish Eigenmannia.
169, 117-125.
(1997). Brain organization: from molecules to parallel processing.
(Trimble, MR., & Cummings JL., Ed.).Contemporary Behavioral Neurology. 5-28.