Lab Publications
(2002).
Brain Diseases.
(Arbib, MA., & Bonaiuto JJ., Ed.).From Neuron to Cognition Via Computational Neuroscience. 673-692.
(2016). Brain organization: from molecules to parallel processing.
(Trimble, MR., & Cummings JL., Ed.).Contemporary Behavioral Neurology. 5-28.
(1997). Computational Neuroscience.
(Asbury, AK., McKhann GM., & McDonald WI., Ed.).Diseases of the Nervous System: Clinical Neurobiology.
(1992).
(2013).
(2013). Genome-wide associations of schizophrenia studied with computer simulation.
(Cutsuridis, V., Graham BP., Cobb S., & Vida I., Ed.).Hippocampal Microcircuits: A Computational Modeler's Resource Book. 2,
(2018). Neocortical simulation for epilepsy surgery guidance: localization and intervention.
(Bass, B., & Garbey M., Ed.).Computational Surgery and Dual Training. 339–349.
(2014). Simulation of large networks: technique and progress.
(Soltesz, I., & Staley K., Ed.).Computational Neuroscience in Epilepsy. 3-17.
(2008). Attentional modulation of receptive fields in a computer model of the thalamocortical system.
Society for Neuroscience 2011 (SFN '11).
(2011). Beta oscillations in neocortex: A multiscale modeling study.
Society for Neuroscience 2016 (SFN '16).
(2016). Beyond the canon: temporal and spatial multiscale organization in cortex.
Computational Neuroscience Meeting Workshop.
(2015). Building, simulating, and visualizing reaction-diffusion models with NEURON's enhanced rxd module.
Society for Neuroscience 2018 (SFN '18).
(2018). Calcium 'impedance mismatch' – the role of geometry on diffusion dynamics.
Society for Neuroscience 2014 (SFN '14).
(2014). Calcium regulation of HCN supports persistent activity associated with working memory: A multiscale model of prefrontal cortex.
Society for Neuroscience 2014 (SFN '14).
(2014). Calcium wave propagation varies with changes in endoplasmic reticulum parameters: A computer model.
Society for Neuroscience 2013 (SFN '13).
(2013). Calcium-electrical interactions: An example of reaction-diffusion in the neuron simulator.
Society for Neuroscience 2012 (SFN '12).
(2012). Circuit changes augment disinhibited shock responses in computer models of neocortex.
American Epilepsy Society Annual Meeting.
(2008). Computational capacity as a function of network size.
Society for Neuroscience 2016 (SFN '16).
(2016). Computer model of a theta-gamma dissociation in hippocampus.
Society for Neuroscience 2009 (SFN '09).
(2009). Computer model of endocannabinoid effects in CA3.
Society for Neuroscience 2015 (SFN '15).
(2015). Computer network model predicts dependence of neocortical laminar activation patterns on form of stimulation.
Society for Neuroscience 2010 (SFN '10).
(2010). Cortical ensembles based on dendritic plateau generation in the prefrontal cortex.
Society for Neuroscience 2017 (SFN '17).
(2017). CPP alters cross-frequency coupling between theta and gamma in CA1 in rats: Simulation and experiment.
Society for Neuroscience 2012 (SFN '12).
(2012). CPP alters hippocampal CA1 oscillations in rat: simulation and experiment.
Computational Neuroscience.
(2012). Creating the synthetic brain through hybrid computational and biological systems repairing and replacing neural networks.
Society for Neuroscience 2010 (SFN '10).
(2010). Dendritic morphology of corticospinal and crossed-corticostriatal neurons in mouse primary motor cortex.
Society for Neuroscience 2016 (SFN '16).
(2016). Dendritic plateau generation model in cortical pyramidal neurons: A link to cortical ensembles.
Society for Neuroscience 2017 (SFN '17).
(2017). Development of In Silico Brain for DARPA REPAIR project.
DARPA Neural Engineering, Science, and Technology Meeting.
(2010). Disinhibition can account for the neural discoordination associated with impaired cognitive control.
Society for Neuroscience 2009 (SFN '09).
(2009). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex.
International Conference on Cognititve and Neural Systems 16.
(2012). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex.
Society for Neuroscience.
(2012). A dynamic data-driven approach to closed-loop neuroprosthetics based on multiscale biomimetic brain models.
IEEE Interanationl Conference on High Performance Computing 2015 Workshop: InfoSymbiotics/Dynamic Data Driven Applications Systems (DDDAS) for Smarter Systems, Bangalore, India.
(2015). Dynamical microstates in primary auditory cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Effects of basal ganglia on cortical computation: A hybrid network/neural field model.
Society for Neuroscience 2012 (SFN '12).
(2012). Effects of basal ganglia on cortical computation: a hybrid network/neural field model.
Society for Neuroscience.
(2012). Embedded ensemble encoding: A hypothesis for reconciling cortical coding strategies.
Society for Neuroscience 2018 (SFN '18).
(2018). Emergent oscillations in neocortex: a simulation study.
Dynamical Neuroscience XVIII: The Resting Brain: Not at Rest! Satellite meeting for Society for Neuroscience Meeting.
(2010). Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm..
Neural Control of Movement.
(2014). Expanding NEURON support for reaction-diffusion models.
Society for Neuroscience 2016 (SFN '16).
(2016). Grid-cell models for navigation and context discrimination.
Society for Neuroscience 2009 (SFN '09).
(2009). Hybrid 1d/3d reaction-diffusion in the neuron simulator.
Society for Neuroscience 2015 (SFN '15).
(2015). Identifying avalanches in simulated mouse primary motor cortex (M1).
Society for Neuroscience 2018 (SFN '18).
(2018). Information transmission vs processing in computer models of neocortical columns.
Society for Neuroscience 2009 (SFN '09).
(2009). Integrating Systems Biology Markup Language (SBML) with NEURON.
Society for Neuroscience 2014 (SFN '14).
(2014). Integrating Systems Biology Markup Language (SBML) with NEURON.
Computational Neuroscience.
(2014). Interfaces in multiscale reaction-diffusion models in the NEURON simulator.
Society for Neuroscience 2013 (SFN '13).
(2013). Interfacing a biomimetic model of sensorimotor cortex with a musculoskeletal model and a robotic arm.
Society for Neuroscience 2013 (SFN '13).
(2013). Interictal EEG discoordination in a rat seizure model.
Statistical Analysis of Neuronal Data.
(2010). Interlaminar feedback connections dominate in macaque inferotemporal cortex: in vivo and in silico studies.
Society for Neuroscience.
(2011). Interlaminar Granger causality and alpha oscillations in a model of macaque cortex.
Computational Neuroscience.
(2011). Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control.
24th Annual Computational Neuroscience Meeting (CNS15).
(2015). Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits.
Society for Neuroscience 2017 (SFN '17).
(2017). A method for multi-simulator reaction-diffusion with NEURON.
Computational Neuroscience.
(2014). Microconnectomics of primary motor cortex: a multiscale computer model.
Multiscale Modeling. National Institutes of Health.
(2015). Modeling electrodiffusion with the NEURON reaction-diffusion module.
Society for Neuroscience 2017 (SFN '17).
(2017). Modulation of stimulus fields in a computer model of the thalamocortical system.
Society for Neuroscience.
(2011). Mosaic multiscale computer modeling of ischemic stroke.
Society for Neuroscience 2016 (SFN '16).
(2016). Motor cortex neurons: from experiment to model via evolutionary algorithms.
Computational Neuroscience.
(2015). Multiscale computer modeling of penumbral zones in brain ischemia.
Society for Neuroscience 2017 (SFN '17).
(2017). Multiscale modeling of brain disease.
Society for Neuroscience 2018 (SFN '18).
(2018). Multiscale simulation of spreading depolarization in ischemic stroke.
Society for Neuroscience 2018 (SFN '18).
(2018). NetPyNE: A GUI-based tool to build, simulate and analyze large-scale, data-driven network models in parallel NEURON.
Society for Neuroscience 2018 (SFN '18).
(2018). NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks.
Computational Neuroscience.
(2016). Network-level coincidence detection in a computer simulation of primary motor cortex.
Society for Neuroscience 2013 (SFN '13).
(2013). Neuron time warp.
Simulation Conference (WSC), 2014 Winter. 3447–3458.
(2014). Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex.
Society for Neuroscience 2015 (SFN '15).
(2015). Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model.
Society for Neuroscience 2015 (SFN '15).
(2015). Ntw-mt: A multi-threaded simulator for reaction diffusion simulations in neuron.
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 157–167.
(2015). Object-oriented reaction-diffusion modeling in the neuron simulator.
Society for Neuroscience 2011 (SFN '11).
(2011). One size does not fit all: Calibrating microstimulation to individual subjects using spiking network models.
Society for Neuroscience 2014 (SFN '14).
(2014). Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings.
Society for Neuroscience.
(2015). Parallel reaction-diffusion simulation in NEURON.
Society for Neuroscience 2015 (SFN '15).
(2015). Parallel stochastic simulation of neuronal reaction-diffusion equations.
Society for Neuroscience 2013 (SFN '13).
(2013). Parallel stochastic spines in NEURON reaction-diffusion simulations.
Society for Neuroscience 2017 (SFN '17).
(2017).